Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007557A_C01 KMC007557A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA89546.1| unnamed protein product [Oryza sativa (japonica ... 108 5e-23
ref|NP_197606.1| putative protein; protein id: At5g21070.1, supp... 103 1e-21
gb|AAM65135.1| unknown [Arabidopsis thaliana] 103 1e-21
gb|AAK91895.1|AC091627_8 hypothetical protein [Solanum demissum] 98 8e-20
ref|NP_419139.1| hypothetical protein [Caulobacter crescentus CB... 33 2.4
>dbj|BAA89546.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 474
Score = 108 bits (270), Expect = 5e-23
Identities = 52/70 (74%), Positives = 59/70 (84%)
Frame = -1
Query: 565 SVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGVLTLIFHHHDHDHDPGKVGSVG 386
+VMTSLVALSFYGASQ+KFHWVERYDK+LVGSVLCLVGVLT +FHHHD D S+
Sbjct: 210 TVMTSLVALSFYGASQIKFHWVERYDKILVGSVLCLVGVLTYVFHHHDGDEH-----SLH 264
Query: 385 EHIHRKLISL 356
EH+HRKL+ L
Sbjct: 265 EHVHRKLLRL 274
>ref|NP_197606.1| putative protein; protein id: At5g21070.1, supported by cDNA:
3689., supported by cDNA: gi_15809943, supported by
cDNA: gi_18958047 [Arabidopsis thaliana]
gi|15809944|gb|AAL06899.1| AT5g21070/T10F18_100
[Arabidopsis thaliana] gi|18958048|gb|AAL79597.1|
AT5g21070/T10F18_100 [Arabidopsis thaliana]
Length = 225
Score = 103 bits (258), Expect = 1e-21
Identities = 51/69 (73%), Positives = 56/69 (80%)
Frame = -1
Query: 562 VMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGVLTLIFHHHDHDHDPGKVGSVGE 383
VMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVG+LTL+FH HDH G
Sbjct: 163 VMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLLFHDHDHG------GHEAH 216
Query: 382 HIHRKLISL 356
+HRK+I+L
Sbjct: 217 QLHRKIITL 225
>gb|AAM65135.1| unknown [Arabidopsis thaliana]
Length = 225
Score = 103 bits (258), Expect = 1e-21
Identities = 51/69 (73%), Positives = 56/69 (80%)
Frame = -1
Query: 562 VMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGVLTLIFHHHDHDHDPGKVGSVGE 383
VMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVG+LTL+FH HDH G
Sbjct: 163 VMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLLFHDHDHG------GHEAH 216
Query: 382 HIHRKLISL 356
+HRK+I+L
Sbjct: 217 QLHRKIITL 225
>gb|AAK91895.1|AC091627_8 hypothetical protein [Solanum demissum]
Length = 130
Score = 97.8 bits (242), Expect = 8e-20
Identities = 50/66 (75%), Positives = 54/66 (81%)
Frame = -1
Query: 565 SVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGVLTLIFHHHDHDHDPGKVGSVG 386
+VMTSLVALSFYGASQLKFHWVE YDKLLVGSVL LVG+LTLIFH HDH+ GS G
Sbjct: 48 TVMTSLVALSFYGASQLKFHWVECYDKLLVGSVLSLVGILTLIFHDHDHEG-----GSAG 102
Query: 385 EHIHRK 368
HI+ K
Sbjct: 103 VHIYLK 108
>ref|NP_419139.1| hypothetical protein [Caulobacter crescentus CB15]
gi|25400044|pir||G87288 hypothetical protein CC0320
[imported] - Caulobacter crescentus
gi|13421465|gb|AAK22307.1| hypothetical protein
[Caulobacter crescentus CB15]
Length = 209
Score = 33.1 bits (74), Expect = 2.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 559 MTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGV 449
M LS G +L WVERY++ ++G L LVG+
Sbjct: 166 MLIFTGLSLAGFKRLGLQWVERYEETILGVALVLVGL 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,159,277
Number of Sequences: 1393205
Number of extensions: 9430756
Number of successful extensions: 23962
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23733
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
