Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007514A_C01 KMC007514A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199330.1| putative protein; protein id: At5g45170.1 [Arab... 35 0.77
ref|XP_163722.1| hypothetical protein XP_163722 [Mus musculus] 32 5.0
>ref|NP_199330.1| putative protein; protein id: At5g45170.1 [Arabidopsis thaliana]
gi|9759602|dbj|BAB11390.1|
gene_id:K18C1.5~pir||T06700~similar to unknown protein
[Arabidopsis thaliana]
Length = 240
Score = 34.7 bits (78), Expect = 0.77
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -3
Query: 545 FPLADATVEGFGGADLTISKLRD 477
FP A ++GFGGADLTI KLR+
Sbjct: 214 FPSAKGVMDGFGGADLTIPKLRN 236
>ref|XP_163722.1| hypothetical protein XP_163722 [Mus musculus]
Length = 480
Score = 32.0 bits (71), Expect = 5.0
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 3/42 (7%)
Frame = -3
Query: 422 PEICNKHNHTCSGFEAF---CRPNDGNGPLEREFKMSVSSET 306
PE + NHTCSG C P DG G +E + + +ET
Sbjct: 266 PEAPDYSNHTCSGVAEIIDVCLPTDGQGTMENQEEQVQPTET 307
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,114,057
Number of Sequences: 1393205
Number of extensions: 9901352
Number of successful extensions: 20791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20785
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
