Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007500A_C01 KMC007500A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_683466.1| expressed protein; protein id: At1g63970.1, sup... 214 6e-55
gb|AAM62786.1| 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth... 212 3e-54
sp|Q9M4W3|ISPF_CATRO 2-C-methyl-D-erythritol 2,4-cyclodiphosphat... 207 1e-52
ref|NP_564819.2| expressed protein; protein id: At1g63970.2, sup... 203 1e-51
gb|AAG35071.1|AF321531_1 2C-methyl-D-erythritol 2,4-cyclodiphosp... 200 2e-50
>ref|NP_683466.1| expressed protein; protein id: At1g63970.1, supported by cDNA:
15758., supported by cDNA: gi_13877782, supported by
cDNA: gi_16323415 [Arabidopsis thaliana]
gi|27805483|sp|Q9CAK8|ISPF_ARATH 2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase, chloroplast precursor
(MECPS) (MECDP-synthase) gi|25404461|pir||H96664 unknown
protein, 376-1789 [imported] - Arabidopsis thaliana
gi|12325003|gb|AAG52445.1|AC010852_2 unknown protein;
376-1789 [Arabidopsis thaliana]
gi|13877783|gb|AAK43969.1|AF370154_1 unknown protein
[Arabidopsis thaliana] gi|16323416|gb|AAL15202.1|
unknown protein [Arabidopsis thaliana]
Length = 231
Score = 214 bits (546), Expect = 6e-55
Identities = 105/119 (88%), Positives = 113/119 (94%)
Frame = -1
Query: 644 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFIKESVRLMHEAGYDIGNLDATL 465
VLLHCVVDAILGALGLPDIGQIFPDSDPKWKG SSVFIKE+VRLM EAGY+IGNLDATL
Sbjct: 113 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATL 172
Query: 464 ILQRPKLSPHKDVIKANLSALLGVDPSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 288
ILQRPK+SPHK+ I++NLS LLG DPSVVN+KAKTHEKVDSLGENRSIAAHTV+LLMKK
Sbjct: 173 ILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231
>gb|AAM62786.1| 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Arabidopsis
thaliana]
Length = 231
Score = 212 bits (540), Expect = 3e-54
Identities = 104/119 (87%), Positives = 112/119 (93%)
Frame = -1
Query: 644 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFIKESVRLMHEAGYDIGNLDATL 465
VLLHCVVDAILGALGLPDIGQIFPDSDPKWKG SSVFIKE+VRLM EAGY+I NLDATL
Sbjct: 113 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIANLDATL 172
Query: 464 ILQRPKLSPHKDVIKANLSALLGVDPSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 288
ILQRPK+SPHK+ I++NLS LLG DPSVVN+KAKTHEKVDSLGENRSIAAHTV+LLMKK
Sbjct: 173 ILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231
>sp|Q9M4W3|ISPF_CATRO 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast
precursor (MECPS) (MECDP-synthase)
gi|7621712|gb|AAF65155.1|AF250236_1
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Catharanthus roseus]
Length = 236
Score = 207 bits (527), Expect = 1e-52
Identities = 101/119 (84%), Positives = 110/119 (91%)
Frame = -1
Query: 644 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFIKESVRLMHEAGYDIGNLDATL 465
VLLHCVVDAILGALGLPDIGQIFPD+DPKWKG SSVFIKE+VRLM EAGY++GNLDATL
Sbjct: 118 VLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATL 177
Query: 464 ILQRPKLSPHKDVIKANLSALLGVDPSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 288
ILQRPK+SPHK+ I+ NL LLG DP VVN+KAKTHEKVDSLGENRSIAAHTVVLLM+K
Sbjct: 178 ILQRPKVSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236
>ref|NP_564819.2| expressed protein; protein id: At1g63970.2, supported by cDNA:
gi_11386014 [Arabidopsis thaliana]
Length = 223
Score = 203 bits (517), Expect = 1e-51
Identities = 100/116 (86%), Positives = 108/116 (92%)
Frame = -1
Query: 635 HCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFIKESVRLMHEAGYDIGNLDATLILQ 456
H VDAILGALGLPDIGQIFPDSDPKWKG SSVFIKE+VRLM EAGY+IGNLDATLILQ
Sbjct: 108 HSDVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQ 167
Query: 455 RPKLSPHKDVIKANLSALLGVDPSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 288
RPK+SPHK+ I++NLS LLG DPSVVN+KAKTHEKVDSLGENRSIAAHTV+LLMKK
Sbjct: 168 RPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 223
>gb|AAG35071.1|AF321531_1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Arabidopsis
thaliana]
Length = 223
Score = 200 bits (508), Expect = 2e-50
Identities = 98/116 (84%), Positives = 107/116 (91%)
Frame = -1
Query: 635 HCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFIKESVRLMHEAGYDIGNLDATLILQ 456
H VDAILGALGLPDIGQIFPDSDPKWK SSVFIKE+VRLM EAGY+IGNLDATLILQ
Sbjct: 108 HSDVDAILGALGLPDIGQIFPDSDPKWKEAASSVFIKEAVRLMDEAGYEIGNLDATLILQ 167
Query: 455 RPKLSPHKDVIKANLSALLGVDPSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 288
RPK+SPHK+ I++NLS LLG DPSVVN+KAKTHEKVDSLGENRS+AAHTV+LLMKK
Sbjct: 168 RPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSVAAHTVILLMKK 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,377,167
Number of Sequences: 1393205
Number of extensions: 10490910
Number of successful extensions: 26662
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 24366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26575
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
