Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007496A_C01 KMC007496A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD09248.1| EREBP-3 homolog [Stylosanthes hamata] 206 1e-52
gb|AAD00708.1| ethylene-responsive element binding protein homol... 203 1e-51
pir||T02433 DNA binding protein EREBP-3 - common tobacco gi|1208... 158 4e-38
dbj|BAA97123.1| ethylene-responsive element binding factor [Nico... 155 3e-37
gb|AAO34705.1| ethylene response factor 3 [Lycopersicon esculentum] 152 3e-36
>gb|AAD09248.1| EREBP-3 homolog [Stylosanthes hamata]
Length = 239
Score = 206 bits (525), Expect = 1e-52
Identities = 119/182 (65%), Positives = 128/182 (69%), Gaps = 31/182 (17%)
Frame = +1
Query: 100 MAPRDKTNAVKVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 279
MAPR+KT AVKV N GVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT
Sbjct: 1 MAPREKTPAVKV--------NAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 52
Query: 280 AEEAARAYDTAAREFRGPKAKTNFPFP-SDNV------------KNQSPSQSSTVESSSR 420
AE+AARAYD AAREFRGPKAKTNFPFP SD++ N+SPSQSSTVESSSR
Sbjct: 53 AEDAARAYDAAAREFRGPKAKTNFPFPDSDDINSNNNNIVVVKNNNRSPSQSSTVESSSR 112
Query: 421 DRD-------VAAAADSSSLDLNLAP-------SVRFPFRPQFP----QMPAANQVLFFD 546
DRD A ADSS LDLNLAP S+RFPF+ F MPAA Q L+ D
Sbjct: 113 DRDSYSAAAAATAVADSSPLDLNLAPAGAGFAGSIRFPFQQPFAVFPGGMPAAKQALYLD 172
Query: 547 AI 552
A+
Sbjct: 173 AV 174
>gb|AAD00708.1| ethylene-responsive element binding protein homolog [Stylosanthes
hamata]
Length = 238
Score = 203 bits (516), Expect = 1e-51
Identities = 118/179 (65%), Positives = 125/179 (68%), Gaps = 28/179 (15%)
Frame = +1
Query: 100 MAPRDKTNAVKVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 279
MAPR+KT AVKV NG N GVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT
Sbjct: 1 MAPREKTPAVKV----NGKSNAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 56
Query: 280 AEEAARAYDTAAREFRGPKAKTNFPFP-SDNV----------KNQSPSQSSTVESSSRDR 426
AE+AARAYD AAREFRGPKAKTNFPFP SD++ N+SPSQSSTVESSSRDR
Sbjct: 57 AEDAARAYDAAAREFRGPKAKTNFPFPDSDDINNNNIVVVKNNNRSPSQSSTVESSSRDR 116
Query: 427 D------VAAAADSSSLDLNLAP---SVRFPFRPQFPQ--------MPAANQVLFFDAI 552
D A ADSS LDLNLAP PF Q MPAA Q L+ DA+
Sbjct: 117 DSYSAAAATAVADSSPLDLNLAPQELDSPDPFGSHSTQPFAVFPGGMPAAKQALYLDAV 175
>pir||T02433 DNA binding protein EREBP-3 - common tobacco
gi|1208496|dbj|BAA07322.1| ethylene-responsive element
binding protein [Nicotiana tabacum]
Length = 225
Score = 158 bits (400), Expect = 4e-38
Identities = 95/165 (57%), Positives = 107/165 (64%), Gaps = 24/165 (14%)
Frame = +1
Query: 130 KVSGNGNGNGNG----GVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAR 297
KVS NGN G GVKEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAA+
Sbjct: 6 KVS-NGNLKGGNVKTDGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAK 64
Query: 298 AYDTAAREFRGPKAKTNFPFPSDNVKNQSPSQSSTVESSSRDRDVAA------------- 438
AYDTAAREFRGPKAKTNFP P++ NQSPS SSTVESSS + V A
Sbjct: 65 AYDTAAREFRGPKAKTNFPSPTE---NQSPSHSSTVESSSGENGVHAPPHAPLELDLTRR 121
Query: 439 ----AADSSSLDLNLAPSVRFPF---RPQFPQMPAANQVLFFDAI 552
AAD + + V +P +P +P VL FD++
Sbjct: 122 LGSVAADGGD-NCRRSGEVGYPIFHQQPTVAVLPNGQPVLLFDSL 165
>dbj|BAA97123.1| ethylene-responsive element binding factor [Nicotiana sylvestris]
Length = 227
Score = 155 bits (392), Expect = 3e-37
Identities = 93/171 (54%), Positives = 110/171 (63%), Gaps = 20/171 (11%)
Frame = +1
Query: 100 MAPRDKTNAVKVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 279
MA ++K + + G GN NG VKEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT
Sbjct: 1 MAVKNKVSNGDLKG-GNVKTNG-VKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 58
Query: 280 AEEAARAYDTAAREFRGPKAKTNFPFPSDNVKNQSPSQSSTVESSSRDRDVAA------- 438
AEEAA+AYDTAAREFRGPKAKTNFP PS+ NQS S SST+ESSS + + A
Sbjct: 59 AEEAAKAYDTAAREFRGPKAKTNFPLPSE---NQSTSHSSTMESSSGETGIHAPPHAPLE 115
Query: 439 ----------AADSSSLDLNLAPSVRFPF---RPQFPQMPAANQVLFFDAI 552
AAD + + V +P +P +P VL FD++
Sbjct: 116 LDLTRRLGSVAADGGD-NCRRSGEVGYPIFHQQPTVAVLPNGQPVLLFDSL 165
>gb|AAO34705.1| ethylene response factor 3 [Lycopersicon esculentum]
Length = 222
Score = 152 bits (384), Expect = 3e-36
Identities = 89/140 (63%), Positives = 96/140 (68%), Gaps = 12/140 (8%)
Frame = +1
Query: 100 MAPRDKTNAVKVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 279
MAP++K AV N NG KEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT
Sbjct: 1 MAPKEKIGAVTAMAMVNLNGIS--KEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 58
Query: 280 AEEAARAYDTAAREFRGPKAKTNFP-----------FPSDNVKNQSPSQSSTVESSSRDR 426
AEEAARAYD AAREFRG KAKTNFP F N N+SP Q+STVESSS
Sbjct: 59 AEEAARAYDNAAREFRGAKAKTNFPKLEMEKEEDLKFAVKNEINRSPGQTSTVESSS--- 115
Query: 427 DVAAAADSSS-LDLNLAPSV 483
DSSS LDL+L S+
Sbjct: 116 --PVMVDSSSPLDLSLCGSI 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.316 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,126,148
Number of Sequences: 1393205
Number of extensions: 12844599
Number of successful extensions: 72565
Number of sequences better than 10.0: 502
Number of HSP's better than 10.0 without gapping: 59996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70627
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
