Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007492A_C01 KMC007492A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191771.1| multifunctional aminoacyl-tRNA ligase-like prot... 191 6e-48
ref|NP_196649.1| putative protein; protein id: At5g10880.1 [Arab... 157 5e-38
gb|EAA21431.1| prolyl-tRNA synthetase, putative [Plasmodium yoel... 100 1e-20
ref|NP_701499.1| Bi-functional aminoacyl-tRNA synthetase, putati... 98 6e-20
ref|NP_011884.1| Protein required for cell viability; Yhr020wp [... 84 1e-15
>ref|NP_191771.1| multifunctional aminoacyl-tRNA ligase-like protein; protein id:
At3g62120.1, supported by cDNA: gi_16648884 [Arabidopsis
thaliana] gi|11279771|pir||T48004 multifunctional
aminoacyl-tRNA ligase-like protein - Arabidopsis
thaliana gi|6899922|emb|CAB71872.1| multifunctional
aminoacyl-tRNA ligase-like protein [Arabidopsis
thaliana] gi|16648885|gb|AAL24294.1| multifunctional
aminoacyl-tRNA ligase-like protein [Arabidopsis
thaliana] gi|22136084|gb|AAM91120.1| multifunctional
aminoacyl-tRNA ligase-like protein [Arabidopsis
thaliana]
Length = 530
Score = 191 bits (484), Expect = 6e-48
Identities = 85/107 (79%), Positives = 98/107 (91%)
Frame = -3
Query: 515 LVEELKKLLDNIQQNLFDVAKQKRDECIQIIHTWDEFIQALNEKNMILAPWCDEEEVEAD 336
LVE +K+LL+ IQQN+++VAKQKR+ C+Q + TWDEFI+ALNEK +ILAPWCDEEEVE D
Sbjct: 424 LVEHVKELLEKIQQNMYEVAKQKREACVQEVKTWDEFIKALNEKKLILAPWCDEEEVERD 483
Query: 335 VKARTRGETGAAKTLCSPFDQPELPEGTKCFASGKPATKWSYWGRSY 195
VKART+GETGAAKTLCSPFDQPELPEGT CFASGKPA KW+YWGRSY
Sbjct: 484 VKARTKGETGAAKTLCSPFDQPELPEGTLCFASGKPAKKWTYWGRSY 530
>ref|NP_196649.1| putative protein; protein id: At5g10880.1 [Arabidopsis thaliana]
gi|11358291|pir||T50797 hypothetical protein T30N20_150
- Arabidopsis thaliana gi|8979722|emb|CAB96843.1|
putative protein [Arabidopsis thaliana]
Length = 309
Score = 157 bits (398), Expect = 5e-38
Identities = 72/112 (64%), Positives = 89/112 (79%), Gaps = 5/112 (4%)
Frame = -3
Query: 515 LVEELKKLLDNIQQNLFDVAKQKRDECIQIIHTWDEFIQALNEKNMILAPWCDEEEVEAD 336
L+E++K LL+ IQ NL+DVAK+K +EC Q + TWDEF++AL++K +ILAPWCD+ EVE D
Sbjct: 198 LIEQVKDLLEKIQSNLYDVAKRKVEECTQKVETWDEFVEALSQKKLILAPWCDKVEVEKD 257
Query: 335 VKARTRGET-----GAAKTLCSPFDQPELPEGTKCFASGKPATKWSYWGRSY 195
VK RTRG+ G AKTLC+P +QPEL E T CFASGKPA KWSYWGRSY
Sbjct: 258 VKRRTRGDETGGGGGGAKTLCTPLEQPELGEETLCFASGKPAKKWSYWGRSY 309
>gb|EAA21431.1| prolyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
Length = 728
Score = 100 bits (248), Expect = 1e-20
Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 11/115 (9%)
Frame = -3
Query: 506 ELKKLLDNIQQNLFDVAKQKRDECIQIIHTWDEFIQALNEKNMILAPWCDEEEVEADVKA 327
E +++L +I +NLF AK+K D+ I I ++D+ + ALN+K M+LAPWC++ E ++K
Sbjct: 614 ETQQMLVDIHKNLFLKAKKKLDDSIVQITSFDQVMDALNKKKMVLAPWCEDITTEEEIKK 673
Query: 326 RTR-----------GETGAAKTLCSPFDQPELPEGTKCFASGKPATKWSYWGRSY 195
T+ +GA K LC P DQP +P TKCF +GKPA +W +GRSY
Sbjct: 674 ETQRLSMNQTNTETSLSGAMKPLCIPLDQPPMPPNTKCFWTGKPAKRWCLFGRSY 728
>ref|NP_701499.1| Bi-functional aminoacyl-tRNA synthetase, putative [Plasmodium
falciparum 3D7] gi|23496667|gb|AAN36223.1|AE014846_22
Bi-functional aminoacyl-tRNA synthetase, putative
[Plasmodium falciparum 3D7]
Length = 746
Score = 97.8 bits (242), Expect = 6e-20
Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 11/115 (9%)
Frame = -3
Query: 506 ELKKLLDNIQQNLFDVAKQKRDECIQIIHTWDEFIQALNEKNMILAPWCDEEEVEADVKA 327
E +++L +I +NLF AK+K D+ I + ++ E + ALN+K M+LAPWC++ E ++K
Sbjct: 632 ETQQMLVDIHKNLFLKAKKKLDDSIVQVTSFSEVMNALNKKKMVLAPWCEDIATEEEIKK 691
Query: 326 --------RTRGET---GAAKTLCSPFDQPELPEGTKCFASGKPATKWSYWGRSY 195
+T ET GA K LC P DQP +P KCF SGKPA +W +GRSY
Sbjct: 692 ETQRLSLNQTNSETTLSGAMKPLCIPLDQPPMPPNMKCFWSGKPAKRWCLFGRSY 746
>ref|NP_011884.1| Protein required for cell viability; Yhr020wp [Saccharomyces
cerevisiae] gi|731640|sp|P38708|YHI0_YEAST PUTATIVE
PROLYL-TRNA SYNTHETASE YHR020W (PROLINE--TRNA LIGASE)
(PRORS) gi|626755|pir||S46774 multifunctional amino
acid-tRNA ligase homolog - yeast (Saccharomyces
cerevisiae) gi|500692|gb|AAB68873.1| Yhr020wp
[Saccharomyces cerevisiae]
Length = 688
Score = 83.6 bits (205), Expect = 1e-15
Identities = 45/120 (37%), Positives = 65/120 (53%), Gaps = 13/120 (10%)
Frame = -3
Query: 515 LVEELKKLLDNIQQNLFDVAKQKRDECIQIIHTWDEFIQALNEKNMILAPWCDEEEVEAD 336
L + ++L+ +Q +LF AK+ D I++ W F+ ALN+KN+ILAPWC E E D
Sbjct: 569 LEARIPEILEEMQGDLFKKAKELFDTHRVIVNEWSGFVPALNKKNVILAPWCGVMECEED 628
Query: 335 VKART-------------RGETGAAKTLCSPFDQPELPEGTKCFASGKPATKWSYWGRSY 195
+K + + + AK+LC PFDQP L EG KC + A + +GRSY
Sbjct: 629 IKESSAKKDDGEEFEEDDKAPSMGAKSLCIPFDQPVLNEGQKCIKCERIAVNYCMFGRSY 688
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,668,756
Number of Sequences: 1393205
Number of extensions: 9372253
Number of successful extensions: 26028
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 25223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26003
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
