Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007452A_C01 KMC007452A_c01
(842 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191760.1| putative protein; protein id: At3g62010.1 [Arab... 85 1e-15
gb|AAN03688.1|AF411975_1 paladin [Gallus gallus] 46 6e-04
dbj|BAA86588.2| KIAA1274 protein [Homo sapiens] 37 0.36
ref|XP_166125.2| similar to KIAA1274 protein [Homo sapiens] 37 0.36
ref|NP_038781.1| paladin [Mus musculus] gi|1545959|emb|CAA67763.... 35 1.1
>ref|NP_191760.1| putative protein; protein id: At3g62010.1 [Arabidopsis thaliana]
gi|11281205|pir||T47993 hypothetical protein F21F14.180 -
Arabidopsis thaliana gi|6899899|emb|CAB71908.1| putative
protein [Arabidopsis thaliana]
Length = 1232
Score = 85.1 bits (209), Expect = 1e-15
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = -2
Query: 841 GPQSKADVDSVIERCAGAGHLRDDIIYYSKEFEKFTDGDDEERAYLMDMGIKALR 677
GPQSK+DVD ++E CAGAGHLR+DI+YYSKE K DE R+Y+MDMG+KALR
Sbjct: 1157 GPQSKSDVDGIVELCAGAGHLREDIVYYSKELNKLPITKDENRSYIMDMGVKALR 1211
Score = 57.4 bits (137), Expect = 3e-07
Identities = 34/101 (33%), Positives = 50/101 (48%), Gaps = 7/101 (6%)
Frame = -2
Query: 841 GPQSKADVDSVIERCAGAGHLRDDIIYYSKEFEKFTDGDDEERAYLMDMGIKALRRYFFL 662
G + K VD VI++CA +LR+ I Y + D+++R + ++ L RY+FL
Sbjct: 299 GVEGKRQVDKVIDKCASMQNLREAIATYRSSILR--QPDEKKREAALSFFVEYLERYYFL 356
Query: 661 ITFRSYLYCT-------SPSHMEFAAWMDGRPELGHLCNHL 560
I F YL+ S H+ FA WM RPEL + L
Sbjct: 357 ICFAVYLHSEGAFLQSGSLGHVSFADWMRARPELYSILRRL 397
Score = 48.9 bits (115), Expect = 9e-05
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Frame = -2
Query: 841 GPQSKADVDSVIERCAGAGHLRDDIIYYSKEFEKFTDGDDEERAYLMDMGIKALRRYFFL 662
G +S+ +D+VI+RC+ ++R+ ++ Y K F + + R+ + G + L RYF L
Sbjct: 738 GVESREALDAVIDRCSALQNIREAVLQYRKVFNQ-QHVEPRVRSAALKRGAEYLERYFRL 796
Query: 661 ITFRSYL--------YCTSPSHMEFAAWMDGRPEL 581
I F +YL + S + F W+ RPE+
Sbjct: 797 IAFAAYLGSKAFDGFFVEGESKVTFKNWLHQRPEV 831
>gb|AAN03688.1|AF411975_1 paladin [Gallus gallus]
Length = 843
Score = 46.2 bits (108), Expect = 6e-04
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = -2
Query: 841 GPQSKADVDSVIERCAGAGHLRDDIIYYSKEFEKFTDGDDEE------RAYLMDMGIKAL 680
G Q +VDSVI C+ +++ I K+ E G+D + + Y + +++L
Sbjct: 340 GQQMVEEVDSVIASCSEMHDMKEAIYESKKKLEGI--GEDYQIQGNSTKEYFLQRTLQSL 397
Query: 679 RRYFFLITFRSYLYCTSP--SHMEFAAWMDGRPELGHL 572
RYF+LI F YL+ P + F+ WM PEL L
Sbjct: 398 ERYFYLIAFNYYLHEQYPLGFALSFSRWMCRHPELYRL 435
Score = 34.3 bits (77), Expect = 2.4
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Frame = -2
Query: 841 GPQSKADVDSVIERCAGAG-----HLRDDIIYYSKEFEKFTDGDDEERAYLMDMGIKALR 677
G + K +VD ++ + HLR+ II ++ + D++ER L ++ L
Sbjct: 706 GHRMKKEVDMALDTVSETMTPMHYHLREIIICTYRQGR--SGKDEQERRLLRLRSLQYLE 763
Query: 676 RYFFLITFRSYLYCTSPSHME--FAAWM 599
RY +LI F SYL+ + F+ WM
Sbjct: 764 RYIYLILFNSYLHLEKKDSWQRPFSLWM 791
>dbj|BAA86588.2| KIAA1274 protein [Homo sapiens]
Length = 861
Score = 37.0 bits (84), Expect = 0.36
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Frame = -2
Query: 841 GPQSKADVDSVIERCAGAGHLRDDIIYYSKEFEKFTDGDDEE----RAYLMDMGIKALRR 674
G + +VD I CA L++ ++ K+ E + R + + +L R
Sbjct: 373 GRRMVEEVDRAITACAELHDLKEVVLENQKKLEGIRPESPAQGSGSRHSVWQRALWSLER 432
Query: 673 YFFLITFRSYLYCTSP--SHMEFAAWMDGRPELGHL 572
YF+LI F YL+ P + F+ W+ PEL L
Sbjct: 433 YFYLILFNYYLHEQYPLAFALSFSRWLCAHPELYRL 468
>ref|XP_166125.2| similar to KIAA1274 protein [Homo sapiens]
Length = 856
Score = 37.0 bits (84), Expect = 0.36
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Frame = -2
Query: 841 GPQSKADVDSVIERCAGAGHLRDDIIYYSKEFEKFTDGDDEE----RAYLMDMGIKALRR 674
G + +VD I CA L++ ++ K+ E + R + + +L R
Sbjct: 368 GRRMVEEVDRAITACAELHDLKEVVLENQKKLEGIRPESPAQGSGSRHSVWQRALWSLER 427
Query: 673 YFFLITFRSYLYCTSP--SHMEFAAWMDGRPELGHL 572
YF+LI F YL+ P + F+ W+ PEL L
Sbjct: 428 YFYLILFNYYLHEQYPLAFALSFSRWLCAHPELYRL 463
>ref|NP_038781.1| paladin [Mus musculus] gi|1545959|emb|CAA67763.1| paladin [Mus
musculus]
Length = 859
Score = 35.4 bits (80), Expect = 1.1
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Frame = -2
Query: 838 PQSKA---DVDSVIERCAGAGHLRDDIIYYSKEFEKF---TDGDD-EERAYLMDMGIKAL 680
PQ K +VD I CA L+++++ + E F + G + + + + +L
Sbjct: 369 PQGKKMVEEVDRAISACAELHDLKEEVLKNQRRLESFRPESRGQECGSQQAVQQRALWSL 428
Query: 679 RRYFFLITFRSYLYCTSP--SHMEFAAWMDGRPELGHL 572
YF+L+ F YL+ P + F+ W+ PEL L
Sbjct: 429 ELYFYLLLFNYYLHEQYPLAFALSFSRWLCTHPELYRL 466
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 742,039,864
Number of Sequences: 1393205
Number of extensions: 16187590
Number of successful extensions: 37891
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 36356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37865
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44037481446
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
