Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007433A_C01 KMC007433A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702082.1| spliceosome-associated protein, putative [Plasm... 40 0.021
emb|CAA75361.1| HepB protein [Cylindrotheca fusiformis] 39 0.046
sp|Q47279|HRPN_ERWCA HARPIN (HARPIN-ECC) gi|1381104|gb|AAB49733.... 37 0.13
gb|AAK97283.1|AF302656_11 HrpN [Pectobacterium carotovorum subsp... 37 0.13
pir||T06806 proline rich protein homolog WCOR518 - wheat (fragme... 37 0.13
>ref|NP_702082.1| spliceosome-associated protein, putative [Plasmodium falciparum
3D7] gi|23497260|gb|AAN36806.1|AE014819_17
spliceosome-associated protein, putative [Plasmodium
falciparum 3D7]
Length = 484
Score = 40.0 bits (92), Expect = 0.021
Identities = 24/58 (41%), Positives = 26/58 (44%)
Frame = +1
Query: 376 PLNTS*TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
P N T+ P LPP P PT PNLP P PP PN P N T+PP
Sbjct: 369 PPNLPPTLPPTLPPNLPPTLPPTLPPNLPPNLPPNFPPTLPPNFPPTLPPNFPPTLPP 426
Score = 37.7 bits (86), Expect = 0.10
Identities = 24/71 (33%), Positives = 28/71 (38%)
Frame = +1
Query: 337 ISPV*TNXNSKLTPLNTS*TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPV 516
I P N + P N S + P +PP P P PNLP P PP P P
Sbjct: 308 IPPKINNRIGNILPSNISSNLPPNIPPNLPPNFPPNFPPNLPPNLPPTLPPTLPPTLPPT 367
Query: 517 PLRNPSVTVPP 549
N T+PP
Sbjct: 368 LPPNLPPTLPP 378
Score = 37.4 bits (85), Expect = 0.13
Identities = 22/52 (42%), Positives = 24/52 (45%)
Frame = +1
Query: 394 TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
T+ P LPPT P PT P LP P PP PN P N T+PP
Sbjct: 359 TLPPTLPPTLPPNLPPTLPPTLPPNLPPTLPPTLPPNLPPNLPPNFPPTLPP 410
Score = 36.2 bits (82), Expect = 0.30
Identities = 22/58 (37%), Positives = 24/58 (40%)
Frame = +1
Query: 376 PLNTS*TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
P N + P LPPT P PT PNLP P PP P P N +PP
Sbjct: 345 PPNLPPNLPPTLPPTLPPTLPPTLPPNLPPTLPPTLPPNLPPTLPPTLPPNLPPNLPP 402
Score = 35.8 bits (81), Expect = 0.39
Identities = 22/58 (37%), Positives = 25/58 (42%)
Frame = +1
Query: 376 PLNTS*TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
P N + P PPT P PT PN P P PP + PN P N T+PP
Sbjct: 393 PPNLPPNLPPNFPPTLPPNFPPTLPPNFPPTLPPNFPPGFPPNLPP----NFPPTLPP 446
Score = 35.4 bits (80), Expect = 0.51
Identities = 21/52 (40%), Positives = 23/52 (43%)
Frame = +1
Query: 394 TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
T+ P LPPT P P P LP P PP PN P N T+PP
Sbjct: 367 TLPPNLPPTLPPTLPPNLPPTLPPTLPPNLPPNLPPNFPPTLPPNFPPTLPP 418
Score = 33.1 bits (74), Expect = 2.5
Identities = 20/52 (38%), Positives = 21/52 (39%)
Frame = +1
Query: 394 TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
T+ P LPP P PT PN P P PP PN P N PP
Sbjct: 391 TLPPNLPPNLPPNFPPTLPPNFPPTLPPNFPPTLPPNFPPGFPPNLPPNFPP 442
Score = 32.7 bits (73), Expect = 3.3
Identities = 22/58 (37%), Positives = 24/58 (40%)
Frame = +1
Query: 376 PLNTS*TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
P N + P LPPT P PT P LP P PP PN P T+PP
Sbjct: 341 PPNFPPNLPPNLPPTLPPTLPPTLPPTLPPNLPPTLPPTLPPNLPP--------TLPP 390
Score = 32.3 bits (72), Expect = 4.3
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = +1
Query: 403 PILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
P LPPT P P PN P P PP PN P N PP
Sbjct: 386 PTLPPTLPPNLPPNLPPNFPPTLPPNFPPTLPPNFPPTLPPNFPPGFPP 434
>emb|CAA75361.1| HepB protein [Cylindrotheca fusiformis]
Length = 886
Score = 38.9 bits (89), Expect = 0.046
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +1
Query: 403 PILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
P PPT+ P PT P P SP PP +PN P P P T PP
Sbjct: 52 PTPPPTRPPTRPPTPPPTRPPTPSPTPPPTPSPNTPPTPPPTPPPTRPP 100
Score = 35.0 bits (79), Expect = 0.66
Identities = 19/51 (37%), Positives = 22/51 (42%)
Frame = +1
Query: 397 INPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
+N + PP P PTR P P P PP +P P P N T PP
Sbjct: 45 VNSLTPPPTPP---PTRPPTRPPTPPPTRPPTPSPTPPPTPSPNTPPTPPP 92
Score = 33.1 bits (74), Expect = 2.5
Identities = 25/63 (39%), Positives = 25/63 (39%)
Frame = +1
Query: 361 NSKLTPLNTS*TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVT 540
NS P T P PPT P PT P P SP PP P P P R P T
Sbjct: 46 NSLTPPPTPPPTRPPTRPPTPPPTRPPTPSPTPPPTPSPNTPP--TPPPTPPPTRPP--T 101
Query: 541 VPP 549
PP
Sbjct: 102 PPP 104
Score = 31.6 bits (70), Expect = 7.3
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +1
Query: 403 PILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPVPLRNPSVTVPP 549
P PPT P PT PN P P PP P P P + + P
Sbjct: 68 PTRPPTPSPTPPPTPSPNTPPTPPPTPPPTRPPTPPPTPAPSRPTDLEP 116
>sp|Q47279|HRPN_ERWCA HARPIN (HARPIN-ECC) gi|1381104|gb|AAB49733.1| putative
Length = 356
Score = 37.4 bits (85), Expect = 0.13
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = -2
Query: 548 GGTVTEGFLRGTGTLFGAYGGGFLGEQKLGRFGYLVGSHLGSWVGGRIGLMVYDVFNGVN 369
GG ++ G L G G+ G GGG LG G G +GS LGS +GG +G + N +N
Sbjct: 66 GGGMSGG-LGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGMNAMN 124
>gb|AAK97283.1|AF302656_11 HrpN [Pectobacterium carotovorum subsp. carotovorum]
Length = 356
Score = 37.4 bits (85), Expect = 0.13
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = -2
Query: 548 GGTVTEGFLRGTGTLFGAYGGGFLGEQKLGRFGYLVGSHLGSWVGGRIGLMVYDVFNGVN 369
GG ++ G L G G+ G GGG LG G G +GS LGS +GG +G + N +N
Sbjct: 66 GGGMSGG-LGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGMNAMN 124
>pir||T06806 proline rich protein homolog WCOR518 - wheat (fragment)
gi|1657851|gb|AAB18205.1| cold acclimation protein
WCOR518 [Triticum aestivum]
Length = 315
Score = 37.4 bits (85), Expect = 0.13
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +1
Query: 337 ISPV*TNXNSKLTPLNTS*TINPILPPTQLPR*LPTR*PNLPSFCSPRNPPPYAPNKVPV 516
++P T K P+ + T P+ PP P PT +P PPP P P
Sbjct: 6 VTPTPTPTPVKPPPVTPTPTPTPVKPPPVTPTPTPTP--------TPVKPPPVTPTPTPS 57
Query: 517 PLRNPSVTVPP 549
P++ P PP
Sbjct: 58 PVKPPPAGTPP 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,357,645
Number of Sequences: 1393205
Number of extensions: 11711656
Number of successful extensions: 50235
Number of sequences better than 10.0: 193
Number of HSP's better than 10.0 without gapping: 39453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47218
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
