Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007429A_C01 KMC007429A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567521.1| ATP-dependent Clp protease proteolytic subunit ... 100 2e-20
gb|AAL91164.1| unknown protein [Arabidopsis thaliana] gi|2319768... 100 2e-20
gb|ZP_00105591.1| hypothetical protein [Prochlorococcus marinus ... 48 1e-04
gb|AAG46151.1|AC018727_3 putative Clp protease [Oryza sativa] 44 0.002
sp|Q60107|CLPP_YEREN ATP-dependent Clp protease proteolytic subu... 43 0.003
>ref|NP_567521.1| ATP-dependent Clp protease proteolytic subunit (ClpR4), putative;
protein id: At4g17040.1, supported by cDNA: 36017.,
supported by cDNA: gi_19698856 [Arabidopsis thaliana]
gi|21593086|gb|AAM65035.1| ATP-dependent Clp protease
proteolytic subunit ClpR4, putative [Arabidopsis
thaliana] gi|26450085|dbj|BAC42162.1| putative ClpP
protease complex subunit ClpR4 [Arabidopsis thaliana]
Length = 305
Score = 99.8 bits (247), Expect = 2e-20
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 598 AKHIEKSPEQIEADIQRPKYFSPSEAVEYGIIDKVLYNERGTADHGVVSDLKRAQLI 428
+KHI KSPEQIEAD++RPKYFSP+EAVEYGIIDKV+YNERG+ D GVVSDLK+AQLI
Sbjct: 249 SKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305
>gb|AAL91164.1| unknown protein [Arabidopsis thaliana] gi|23197684|gb|AAN15369.1|
unknown protein [Arabidopsis thaliana]
Length = 305
Score = 99.8 bits (247), Expect = 2e-20
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 598 AKHIEKSPEQIEADIQRPKYFSPSEAVEYGIIDKVLYNERGTADHGVVSDLKRAQLI 428
+KHI KSPEQIEAD++RPKYFSP+EAVEYGIIDKV+YNERG+ D GVVSDLK+AQLI
Sbjct: 249 SKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305
>gb|ZP_00105591.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 215
Score = 47.8 bits (112), Expect = 1e-04
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = -2
Query: 598 AKHIEKSPEQIEADIQRPKYFSPSEAVEYGIIDKVLYNER 479
AKH +S E+I D +R + SP EAVEYG+IDKV+ N++
Sbjct: 176 AKHTNQSLEKINEDTERDYFLSPEEAVEYGLIDKVIKNDK 215
>gb|AAG46151.1|AC018727_3 putative Clp protease [Oryza sativa]
Length = 293
Score = 43.5 bits (101), Expect = 0.002
Identities = 17/31 (54%), Positives = 24/31 (76%)
Frame = -2
Query: 583 KSPEQIEADIQRPKYFSPSEAVEYGIIDKVL 491
++PEQ+E DI R +Y P EAV+YG+ID V+
Sbjct: 221 RTPEQVEKDIDRDRYMGPLEAVDYGLIDSVI 251
>sp|Q60107|CLPP_YEREN ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
gi|1377852|gb|AAC45782.1| ClpP [Yersinia enterocolitica]
Length = 207
Score = 43.1 bits (100), Expect = 0.003
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 598 AKHIEKSPEQIEADIQRPKYFSPSEAVEYGIIDKV 494
AKH KS E+IE D +R ++ S EAVEYG++D V
Sbjct: 168 AKHTGKSLEEIERDTERDRFLSADEAVEYGLVDSV 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,317,664
Number of Sequences: 1393205
Number of extensions: 8501800
Number of successful extensions: 16921
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 16517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16921
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
