Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007410A_C01 KMC007410A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187498.1| putative aminotransferase; protein id: At3g0886... 148 4e-43
gb|AAK76615.1| putative beta-alanine-pyruvate aminotransferase [... 129 2e-39
ref|NP_181374.1| putative beta-alanine-pyruvate aminotransferase... 129 2e-39
ref|NP_568064.1| putative protein; protein id: At4g39660.1, supp... 134 4e-39
gb|AAD48837.1|AF166351_1 alanine:glyoxylate aminotransferase 2 h... 134 4e-39
>ref|NP_187498.1| putative aminotransferase; protein id: At3g08860.1, supported by
cDNA: gi_20466699 [Arabidopsis thaliana]
gi|6403506|gb|AAF07846.1|AC010871_22 putative
aminotransferase [Arabidopsis thaliana]
gi|20466700|gb|AAM20667.1| putative aminotransferase
[Arabidopsis thaliana]
Length = 481
Score = 148 bits (374), Expect(2) = 4e-43
Identities = 68/109 (62%), Positives = 84/109 (76%), Gaps = 3/109 (2%)
Frame = +3
Query: 162 RRGISQPAAERT---KEATLPAPPTEFPPFDYTPPPYSGPSGEEIIAKRKEHLSPSLFHF 332
R G SQ AA+RT +E + PPF+Y+PPPY GPS EIIAKR+E LSP+LFHF
Sbjct: 20 RHGSSQTAAQRTSSVRETETETKLPKMPPFNYSPPPYDGPSTAEIIAKRREFLSPALFHF 79
Query: 333 YKTPLNVVEGRRQYLFDDTGRRYIDAFGGIATVCCGHCHPDVVAAIVEQ 479
Y TPLN+VE + QY+FD+ GRRY+DAFGGIATV CGHCHP+VV ++V+Q
Sbjct: 80 YNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHPEVVNSVVKQ 128
Score = 48.1 bits (113), Expect(2) = 4e-43
Identities = 24/39 (61%), Positives = 27/39 (68%)
Frame = +2
Query: 482 KRLQHSTVLYLNSAISDFAEALASKLPGNLKWRFLXILG 598
K + HST+LYLN ISDFAEAL S LPG+LK F G
Sbjct: 130 KLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSG 168
>gb|AAK76615.1| putative beta-alanine-pyruvate aminotransferase [Arabidopsis
thaliana]
Length = 477
Score = 129 bits (324), Expect(2) = 2e-39
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = +3
Query: 234 PPFDYTPPPYSGPSGEEIIAKRKEHLSPSLFHFYKTPLNVVEGRRQYLFDDTGRRYIDAF 413
PPF YTPPPY+GPS + I++KRKE LSPS+F Y+ PLN+V+G+ QYLFD++GRRY+DAF
Sbjct: 44 PPFAYTPPPYTGPSADVILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGRRYLDAF 103
Query: 414 GGIATVCCGHCHPDVVAAIVEQ 479
GIA V CGHCHPDVV ++ Q
Sbjct: 104 AGIAVVNCGHCHPDVVEPVINQ 125
Score = 55.1 bits (131), Expect(2) = 2e-39
Identities = 28/39 (71%), Positives = 31/39 (78%)
Frame = +2
Query: 482 KRLQHSTVLYLNSAISDFAEALASKLPGNLKWRFLXILG 598
KRLQH TVLYLN AI+DF+EALASKLPG+LK F G
Sbjct: 127 KRLQHPTVLYLNHAIADFSEALASKLPGDLKVVFFTNSG 165
>ref|NP_181374.1| putative beta-alanine-pyruvate aminotransferase; protein id:
At2g38400.1, supported by cDNA: 147543., supported by
cDNA: gi_15028236, supported by cDNA: gi_5731260
[Arabidopsis thaliana] gi|7434183|pir||T02505 probable
beta-alanine-pyruvate aminotransferase At2g38400
[imported] - Arabidopsis thaliana
gi|3395432|gb|AAC28764.1| putative beta-alanine-pyruvate
aminotransferase [Arabidopsis thaliana]
gi|5731261|gb|AAD48838.1|AF166352_1 alanine:glyoxylate
aminotransferase 2 homolog [Arabidopsis thaliana]
gi|21553486|gb|AAM62579.1| putative
beta-alanine-pyruvate aminotransferase [Arabidopsis
thaliana] gi|25054854|gb|AAN71917.1| putative
beta-alanine-pyruvate aminotransferase [Arabidopsis
thaliana]
Length = 477
Score = 129 bits (324), Expect(2) = 2e-39
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = +3
Query: 234 PPFDYTPPPYSGPSGEEIIAKRKEHLSPSLFHFYKTPLNVVEGRRQYLFDDTGRRYIDAF 413
PPF YTPPPY+GPS + I++KRKE LSPS+F Y+ PLN+V+G+ QYLFD++GRRY+DAF
Sbjct: 44 PPFAYTPPPYTGPSADVILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGRRYLDAF 103
Query: 414 GGIATVCCGHCHPDVVAAIVEQ 479
GIA V CGHCHPDVV ++ Q
Sbjct: 104 AGIAVVNCGHCHPDVVEPVINQ 125
Score = 55.1 bits (131), Expect(2) = 2e-39
Identities = 28/39 (71%), Positives = 31/39 (78%)
Frame = +2
Query: 482 KRLQHSTVLYLNSAISDFAEALASKLPGNLKWRFLXILG 598
KRLQH TVLYLN AI+DF+EALASKLPG+LK F G
Sbjct: 127 KRLQHPTVLYLNHAIADFSEALASKLPGDLKVVFFTNSG 165
>ref|NP_568064.1| putative protein; protein id: At4g39660.1, supported by cDNA:
gi_15809991, supported by cDNA: gi_5731258 [Arabidopsis
thaliana] gi|15809992|gb|AAL06923.1| AT4g39660/T19P19_50
[Arabidopsis thaliana] gi|25141217|gb|AAN73303.1|
At4g39660/T19P19_50 [Arabidopsis thaliana]
Length = 476
Score = 134 bits (336), Expect(2) = 4e-39
Identities = 57/108 (52%), Positives = 77/108 (70%)
Frame = +3
Query: 156 FFRRGISQPAAERTKEATLPAPPTEFPPFDYTPPPYSGPSGEEIIAKRKEHLSPSLFHFY 335
+ RR IS + + ++ P PPF + P PY GPS +E++ KRK+ L PSLFH+Y
Sbjct: 16 YHRRAISLLRTDFSTSPSIADAPPHIPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYY 75
Query: 336 KTPLNVVEGRRQYLFDDTGRRYIDAFGGIATVCCGHCHPDVVAAIVEQ 479
+ PLN+VEG+ QYL+D++GRRY+DAF GI TV CGHCHPD++ AI EQ
Sbjct: 76 QKPLNIVEGKMQYLYDESGRRYLDAFAGIVTVSCGHCHPDILNAITEQ 123
Score = 49.7 bits (117), Expect(2) = 4e-39
Identities = 22/32 (68%), Positives = 28/32 (86%)
Frame = +2
Query: 479 TKRLQHSTVLYLNSAISDFAEALASKLPGNLK 574
+K LQH+T +YL+ AI DFAEALA+K+PGNLK
Sbjct: 124 SKLLQHATTIYLHHAIGDFAEALAAKMPGNLK 155
>gb|AAD48837.1|AF166351_1 alanine:glyoxylate aminotransferase 2 homolog [Arabidopsis
thaliana]
Length = 476
Score = 134 bits (336), Expect(2) = 4e-39
Identities = 57/108 (52%), Positives = 77/108 (70%)
Frame = +3
Query: 156 FFRRGISQPAAERTKEATLPAPPTEFPPFDYTPPPYSGPSGEEIIAKRKEHLSPSLFHFY 335
+ RR IS + + ++ P PPF + P PY GPS +E++ KRK+ L PSLFH+Y
Sbjct: 16 YHRRAISLLRTDFSTSPSIADAPPHIPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYY 75
Query: 336 KTPLNVVEGRRQYLFDDTGRRYIDAFGGIATVCCGHCHPDVVAAIVEQ 479
+ PLN+VEG+ QYL+D++GRRY+DAF GI TV CGHCHPD++ AI EQ
Sbjct: 76 QKPLNIVEGKMQYLYDESGRRYLDAFAGIVTVSCGHCHPDILNAITEQ 123
Score = 49.7 bits (117), Expect(2) = 4e-39
Identities = 22/32 (68%), Positives = 28/32 (86%)
Frame = +2
Query: 479 TKRLQHSTVLYLNSAISDFAEALASKLPGNLK 574
+K LQH+T +YL+ AI DFAEALA+K+PGNLK
Sbjct: 124 SKLLQHATTIYLHHAIGDFAEALAAKMPGNLK 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 632,281,142
Number of Sequences: 1393205
Number of extensions: 18015629
Number of successful extensions: 124968
Number of sequences better than 10.0: 1283
Number of HSP's better than 10.0 without gapping: 80839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117313
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
