Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007370A_C01 KMC007370A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177399.1| putative phenylalanyl-tRNA synthetase beta-subu... 96 3e-19
ref|NP_651237.1| CG5706-PA [Drosophila melanogaster] gi|12230002... 66 3e-10
gb|EAA08937.1| agCP7851 [Anopheles gambiae str. PEST] 64 1e-09
ref|NP_218455.1| phenylalanyl-tRNA synthetase beta subunit (pheT... 59 5e-08
gb|AAH06502.1|AAH06502 phenylalanyl-tRNA synthetase beta-subunit... 57 2e-07
>ref|NP_177399.1| putative phenylalanyl-tRNA synthetase beta-subunit; PheHB; protein
id: At1g72550.1, supported by cDNA: gi_17065261
[Arabidopsis thaliana] gi|12644590|sp|Q9SGE9|SYFB_ARATH
Probable phenylalanyl-tRNA synthetase beta chain
(Phenylalanine--tRNA ligase beta chain) (PheRS)
gi|25293324|pir||H96749 hypothetical protein F28P22.26
[imported] - Arabidopsis thaliana
gi|12323785|gb|AAG51865.1|AC010926_28 putative
phenylalanyl-tRNA synthetase beta-subunit; PheHB;
86609-90570 [Arabidopsis thaliana]
gi|17065262|gb|AAL32785.1| putative phenylalanyl-tRNA
synthetase beta-subunit; PheHB [Arabidopsis thaliana]
gi|22136234|gb|AAM91195.1| putative phenylalanyl-tRNA
synthetase beta-subunit; PheHB [Arabidopsis thaliana]
Length = 598
Score = 95.9 bits (237), Expect = 3e-19
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 7/80 (8%)
Frame = -1
Query: 593 MEMNGIPF-------VSSGDISGYYIERSDEPEFLAGRQARIVYKGKPIGIFGIVHPEVL 435
ME+ IPF V + GYY++ S EPEFL GRQA I+ +GK IG FGIVHPEVL
Sbjct: 519 MEVMAIPFLTIHENNVPINEKDGYYVKLSQEPEFLPGRQASIIVRGKHIGNFGIVHPEVL 578
Query: 434 NHFDIPDPCSFVELNIESLL 375
N+FDIPDPCS++EL+IE++L
Sbjct: 579 NNFDIPDPCSYLELDIEAIL 598
>ref|NP_651237.1| CG5706-PA [Drosophila melanogaster]
gi|12230002|sp|Q9VCA5|SYFB_DROME Probable
phenylalanyl-tRNA synthetase beta chain
(Phenylalanine--tRNA ligase beta chain) (PheRS)
gi|7301135|gb|AAF56268.1| CG5706-PA [Drosophila
melanogaster] gi|15292483|gb|AAK93510.1| SD03863p
[Drosophila melanogaster]
Length = 589
Score = 66.2 bits (160), Expect = 3e-10
Identities = 27/70 (38%), Positives = 44/70 (62%)
Frame = -1
Query: 593 MEMNGIPFVSSGDISGYYIERSDEPEFLAGRQARIVYKGKPIGIFGIVHPEVLNHFDIPD 414
M++ +P+ S+ GYY++ +++P + GR A ++Y G IG G++HP VL F++
Sbjct: 517 MQLLSVPWKSASGTKGYYLQATEDPSYFPGRCANVMYDGVVIGKIGVLHPTVLQAFELTT 576
Query: 413 PCSFVELNIE 384
PCS VE IE
Sbjct: 577 PCSAVEFTIE 586
>gb|EAA08937.1| agCP7851 [Anopheles gambiae str. PEST]
Length = 619
Score = 64.3 bits (155), Expect = 1e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = -1
Query: 551 SGYYIERSDEPEFLAGRQARIVYKGKPIGIFGIVHPEVLNHFDIPDPCSFVELNIE 384
+GYY++ D+P + GR A ++YKG IG G++HP VL F++ PCS VE N+E
Sbjct: 561 TGYYLQACDDPAYFPGRCASVLYKGAAIGRIGVLHPTVLQAFELTTPCSVVEFNME 616
>ref|NP_218455.1| phenylalanyl-tRNA synthetase beta subunit (pheT) [Treponema
pallidum] gi|6094400|sp|O83059|SYFB_TREPA
Phenylalanyl-tRNA synthetase beta chain
(Phenylalanine--tRNA ligase beta chain) (PheRS)
gi|7520793|pir||D71377 phenylalanine-tRNA ligase (EC
6.1.1.20) beta chain (pheT) - syphilis spirochete
gi|3322265|gb|AAC65007.1| phenylalanyl-tRNA synthetase
beta subunit (pheT) [Treponema pallidum]
Length = 604
Score = 58.9 bits (141), Expect = 5e-08
Identities = 26/57 (45%), Positives = 39/57 (67%)
Frame = -1
Query: 545 YYIERSDEPEFLAGRQARIVYKGKPIGIFGIVHPEVLNHFDIPDPCSFVELNIESLL 375
Y +E + +P F+ GRQA I G +GIFG +HP+VL+++DI PC EL++ +LL
Sbjct: 547 YQVEEAQDPRFVLGRQASICVHGSRVGIFGEIHPQVLSNWDIRMPCFAGELDVGALL 603
>gb|AAH06502.1|AAH06502 phenylalanyl-tRNA synthetase beta-subunit [Homo sapiens]
Length = 588
Score = 57.0 bits (136), Expect = 2e-07
Identities = 25/61 (40%), Positives = 38/61 (61%)
Frame = -1
Query: 557 DISGYYIERSDEPEFLAGRQARIVYKGKPIGIFGIVHPEVLNHFDIPDPCSFVELNIESL 378
D GY I+ S+ P F GR A I +G+ +G G++HP+V+ F++ PCS +E+NI
Sbjct: 528 DKGGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPF 587
Query: 377 L 375
L
Sbjct: 588 L 588
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,481,282
Number of Sequences: 1393205
Number of extensions: 10612290
Number of successful extensions: 22379
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 21765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22370
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
