Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007345A_C01 KMC007345A_c01
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB84370.1| P0007F06.9 [Oryza sativa (japonica cultivar-grou... 40 0.024
ref|NP_713986.1| Probable ammonium transporter [Leptospira inter... 33 2.3
ref|XP_216171.1| similar to potassium channel modulatory factor ... 32 5.0
ref|NP_062689.1| potassium channel modulatory factor DEBT-91; cl... 32 5.0
gb|AAA98505.1| RecA protein 32 5.0
>dbj|BAB84370.1| P0007F06.9 [Oryza sativa (japonica cultivar-group)]
gi|21644608|dbj|BAC01167.1| P0485G01.1 [Oryza sativa
(japonica cultivar-group)]
Length = 64
Score = 40.0 bits (92), Expect = 0.024
Identities = 20/34 (58%), Positives = 25/34 (72%)
Frame = -1
Query: 522 DPSLSIEEREKRIRQAAGRSGFVQDLFLSTLFND 421
D SL+ EERE++ +QA R+ FVQ L LSTLF D
Sbjct: 31 DSSLTSEEREQKRKQATDRATFVQGLVLSTLFED 64
>ref|NP_713986.1| Probable ammonium transporter [Leptospira interrogans serovar lai
str. 56601] gi|24197813|gb|AAN51004.1|AE011535_8
Probable ammonium transporter [Leptospira interrogans
serovar lai str. 56601]
Length = 430
Score = 33.5 bits (75), Expect = 2.3
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 197 FSFLGK*KYISSADCAYMDGINGNSHQIQQQNPIHASFHGQIAPLNPLEIS 349
F+F G Y + D A+++GI+ N+ ++ IH F G A + P IS
Sbjct: 95 FAFSGTNPYFGNFDLAFLNGIDENTLELTIPKYIHFLFQGMFALITPALIS 145
>ref|XP_216171.1| similar to potassium channel modulatory factor DEBT-91; clone
DEBT-91 [Mus musculus] [Rattus norvegicus]
Length = 228
Score = 32.3 bits (72), Expect = 5.0
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -1
Query: 585 SSAEDSAAKSTAPAHIWKSSF------DPSLSIEEREKRIRQAAGRSGFVQDLFLSTLFN 424
++ ++A +P + S F DP +S ER+ + A RS FVQ+L LSTL
Sbjct: 118 TATANTANTENSPQALHNSQFLLTRLNDPKMSEAERQSMESERADRSLFVQELLLSTLVR 177
Query: 423 D 421
+
Sbjct: 178 E 178
>ref|NP_062689.1| potassium channel modulatory factor DEBT-91; clone DEBT-91 [Mus
musculus] gi|4838557|gb|AAD31040.1| DEBT-91 [Mus
musculus]
Length = 296
Score = 32.3 bits (72), Expect = 5.0
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -1
Query: 585 SSAEDSAAKSTAPAHIWKSSF------DPSLSIEEREKRIRQAAGRSGFVQDLFLSTLFN 424
++ ++A +P + S F DP +S ER+ + A RS FVQ+L LSTL
Sbjct: 186 TATANTANTENSPQALHNSQFLLTRLNDPKMSEAERQSMESERADRSLFVQELLLSTLVR 245
Query: 423 D 421
+
Sbjct: 246 E 246
>gb|AAA98505.1| RecA protein
Length = 355
Score = 32.3 bits (72), Expect = 5.0
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 428 NKVERNKSCTKPDLPAACLILFSRSSILKEGSKLDFQI 541
+ V +NKSC P PA I+F+ + I +EGS +D +
Sbjct: 259 SNVVKNKSCPPPFKPAEFDIIFNHAGISREGSLVDLGV 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,717,950
Number of Sequences: 1393205
Number of extensions: 10171173
Number of successful extensions: 25435
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25434
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
