Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007146A_C01 KMC007146A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173761.2| polygalacturonase, putative; protein id: At1g23... 114 6e-25
pir||C86368 hypothetical protein F5O8.3 - Arabidopsis thaliana g... 114 6e-25
gb|AAM94323.1| unknown protein [Sorghum bicolor] 109 2e-23
ref|NP_174289.1| hypothetical protein; protein id: At1g29960.1 [... 107 1e-22
ref|NP_659418.1| hypothetical protein FLJ25059 [Homo sapiens] gi... 102 2e-21
>ref|NP_173761.2| polygalacturonase, putative; protein id: At1g23470.1 [Arabidopsis
thaliana]
Length = 288
Score = 114 bits (285), Expect = 6e-25
Identities = 52/82 (63%), Positives = 65/82 (78%)
Frame = -2
Query: 498 RGDIVCLCSPANPTTFITKRVVGMEGDTVTYLPSPMDSDQLETIVVPKGHVWVEGDNIFN 319
RGDIV + SP NP KRVVG+EGD ++++ P+ SD+ +TIVVPKGHV+V+GD N
Sbjct: 73 RGDIVVIRSPENPNKTPIKRVVGVEGDCISFVIDPVKSDESQTIVVPKGHVFVQGDYTHN 132
Query: 318 SKDSRNFGPVPYGLIQGRIFWR 253
S+DSRNFGPVPYGLIQGR+ WR
Sbjct: 133 SRDSRNFGPVPYGLIQGRVLWR 154
>pir||C86368 hypothetical protein F5O8.3 - Arabidopsis thaliana
gi|4056468|gb|AAC98041.1| Contains similarity to
gb|X66426 polygalacturonase from Persea americana and is
a member of the signal peptidase family PF|00461 and
polygalacturonase family PF|00295. [Arabidopsis
thaliana]
Length = 313
Score = 114 bits (285), Expect = 6e-25
Identities = 52/82 (63%), Positives = 65/82 (78%)
Frame = -2
Query: 498 RGDIVCLCSPANPTTFITKRVVGMEGDTVTYLPSPMDSDQLETIVVPKGHVWVEGDNIFN 319
RGDIV + SP NP KRVVG+EGD ++++ P+ SD+ +TIVVPKGHV+V+GD N
Sbjct: 73 RGDIVVIRSPENPNKTPIKRVVGVEGDCISFVIDPVKSDESQTIVVPKGHVFVQGDYTHN 132
Query: 318 SKDSRNFGPVPYGLIQGRIFWR 253
S+DSRNFGPVPYGLIQGR+ WR
Sbjct: 133 SRDSRNFGPVPYGLIQGRVLWR 154
>gb|AAM94323.1| unknown protein [Sorghum bicolor]
Length = 173
Score = 109 bits (272), Expect = 2e-23
Identities = 50/81 (61%), Positives = 62/81 (75%)
Frame = -2
Query: 495 GDIVCLCSPANPTTFITKRVVGMEGDTVTYLPSPMDSDQLETIVVPKGHVWVEGDNIFNS 316
GD+V + SP +P + KRVVGMEGD+VTYL P SD +T+VVP+GHVWV+GDN + S
Sbjct: 78 GDVVLMISPEDPRKSVAKRVVGMEGDSVTYLVDPGSSDASKTVVVPQGHVWVQGDNPYAS 137
Query: 315 KDSRNFGPVPYGLIQGRIFWR 253
+DSR FG VPYGLI G+IF R
Sbjct: 138 RDSRQFGAVPYGLITGKIFCR 158
>ref|NP_174289.1| hypothetical protein; protein id: At1g29960.1 [Arabidopsis
thaliana] gi|25518520|pir||D86423 hypothetical protein
T1P2.16 - Arabidopsis thaliana
gi|12324166|gb|AAG52053.1|AC022455_7 hypothetical
protein; 16689-19163 [Arabidopsis thaliana]
Length = 310
Score = 107 bits (266), Expect = 1e-22
Identities = 49/82 (59%), Positives = 62/82 (74%)
Frame = -2
Query: 498 RGDIVCLCSPANPTTFITKRVVGMEGDTVTYLPSPMDSDQLETIVVPKGHVWVEGDNIFN 319
RGDIV + SP NP KRV+G+EGD ++++ SD+ +TIVVPKGHV+V+GD N
Sbjct: 73 RGDIVVIRSPENPNKTPIKRVIGIEGDCISFVIDSRKSDESQTIVVPKGHVFVQGDYTHN 132
Query: 318 SKDSRNFGPVPYGLIQGRIFWR 253
S+DSRNFG VPYGLIQGR+ WR
Sbjct: 133 SRDSRNFGTVPYGLIQGRVLWR 154
>ref|NP_659418.1| hypothetical protein FLJ25059 [Homo sapiens]
gi|16553729|dbj|BAB71573.1| unnamed protein product
[Homo sapiens] gi|23270839|gb|AAH23595.1| hypothetical
protein FLJ25059 [Homo sapiens]
Length = 166
Score = 102 bits (255), Expect = 2e-21
Identities = 53/94 (56%), Positives = 69/94 (73%)
Frame = -2
Query: 498 RGDIVCLCSPANPTTFITKRVVGMEGDTVTYLPSPMDSDQLETIVVPKGHVWVEGDNIFN 319
RGDIV SP++P + I KRV+G+EGD + SP D + + V P GHVW+EGDN+ N
Sbjct: 65 RGDIVIAKSPSDPKSNICKRVIGLEGDKIL-TTSPSDFFKSHSYV-PMGHVWLEGDNLQN 122
Query: 318 SKDSRNFGPVPYGLIQGRIFWRVLPLKDFGPFLR 217
S DSR +GP+PYGLI+GRIF+++ PL DFG FLR
Sbjct: 123 STDSRCYGPIPYGLIRGRIFFKIWPLSDFG-FLR 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,898,495
Number of Sequences: 1393205
Number of extensions: 9758812
Number of successful extensions: 24761
Number of sequences better than 10.0: 222
Number of HSP's better than 10.0 without gapping: 23983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24712
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
