Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007086A_C01 KMC007086A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193109.1| putative protein; protein id: At4g13730.1 [Arab... 201 3e-51
gb|AAO42175.1| unknown protein [Arabidopsis thaliana] gi|2897312... 194 5e-49
ref|NP_171975.1| hypothetical protein; protein id: At1g04830.1 [... 194 5e-49
pir||E86181 hypothetical protein [imported] - Arabidopsis thalia... 112 2e-28
ref|NP_060671.2| hypothetical protein FLJ10743 [Homo sapiens] gi... 104 5e-22
>ref|NP_193109.1| putative protein; protein id: At4g13730.1 [Arabidopsis thaliana]
gi|7485689|pir||T05242 hypothetical protein F18A5.120 -
Arabidopsis thaliana gi|4455302|emb|CAB36837.1| putative
protein [Arabidopsis thaliana]
gi|7268077|emb|CAB78415.1| putative protein [Arabidopsis
thaliana]
Length = 449
Score = 201 bits (512), Expect = 3e-51
Identities = 95/108 (87%), Positives = 103/108 (94%)
Frame = -3
Query: 512 LLKEHDEELWRHLEVTTKVNPQFYSFRWITLLLTQEFNFHDILHIWDTLLSDPEGPQETL 333
LLK HDEELWRHLEVTTK+NPQFY+FRWITLLLTQEFNF + LHIWDTLLSDPEGPQETL
Sbjct: 342 LLKHHDEELWRHLEVTTKINPQFYAFRWITLLLTQEFNFVESLHIWDTLLSDPEGPQETL 401
Query: 332 LRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRAQ 189
LRICCAMLILVRRRLLAGDFTSNLKLLQ+YP TNISH+L+VA+KLR +
Sbjct: 402 LRICCAMLILVRRRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLRTK 449
>gb|AAO42175.1| unknown protein [Arabidopsis thaliana] gi|28973127|gb|AAO63888.1|
unknown protein [Arabidopsis thaliana]
Length = 448
Score = 194 bits (493), Expect = 5e-49
Identities = 89/109 (81%), Positives = 103/109 (93%)
Frame = -3
Query: 515 QLLKEHDEELWRHLEVTTKVNPQFYSFRWITLLLTQEFNFHDILHIWDTLLSDPEGPQET 336
QL+++HDEELWRHLE+TTKVNPQFY+FRWITLLLTQEF+F D LHIWD LLSDPEGP E+
Sbjct: 337 QLVRKHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFSFFDSLHIWDALLSDPEGPLES 396
Query: 335 LLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRAQ 189
LL ICCAML+LVRRRL+AGDFTSN+KLLQ YP+TNISHLL+VANKLR++
Sbjct: 397 LLGICCAMLVLVRRRLIAGDFTSNMKLLQHYPTTNISHLLYVANKLRSK 445
>ref|NP_171975.1| hypothetical protein; protein id: At1g04830.1 [Arabidopsis
thaliana]
Length = 451
Score = 194 bits (493), Expect = 5e-49
Identities = 89/109 (81%), Positives = 103/109 (93%)
Frame = -3
Query: 515 QLLKEHDEELWRHLEVTTKVNPQFYSFRWITLLLTQEFNFHDILHIWDTLLSDPEGPQET 336
QL+++HDEELWRHLE+TTKVNPQFY+FRWITLLLTQEF+F D LHIWD LLSDPEGP E+
Sbjct: 340 QLVRKHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFSFFDSLHIWDALLSDPEGPLES 399
Query: 335 LLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRAQ 189
LL ICCAML+LVRRRL+AGDFTSN+KLLQ YP+TNISHLL+VANKLR++
Sbjct: 400 LLGICCAMLVLVRRRLIAGDFTSNMKLLQHYPTTNISHLLYVANKLRSK 448
>pir||E86181 hypothetical protein [imported] - Arabidopsis thaliana
gi|7211982|gb|AAF40453.1|AC004809_11 Similar to
gi|3217452 F45E6.3 gene product from C. elegans cosmid
gb|Z68117. [Arabidopsis thaliana]
Length = 438
Score = 112 bits (281), Expect(2) = 2e-28
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = -3
Query: 515 QLLKEHDEELWRHLEVTTKVNPQFYSFRWITLLLTQEFNFHDILHIWDTLLSDPEGPQET 336
QL+++HDEELWRHLE+TTKVNPQFY+FRWITLLLTQEF+F D LHIWD LLSDPEGP T
Sbjct: 337 QLVRKHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFSFFDSLHIWDALLSDPEGPLLT 396
Query: 335 LLRICCA 315
+C A
Sbjct: 397 GDMLCDA 403
Score = 34.3 bits (77), Expect(2) = 2e-28
Identities = 18/41 (43%), Positives = 22/41 (52%)
Frame = -2
Query: 327 DMLCNANTRSKAPPSG*FHF*SQVAAKLSLYKHQSFAPCCQ 205
DMLC+A T + FH +V + LS YKHQS C Q
Sbjct: 398 DMLCDAGTGEEEANRWGFHVEYEVTSTLSNYKHQSSLVCSQ 438
>ref|NP_060671.2| hypothetical protein FLJ10743 [Homo sapiens]
gi|15928872|gb|AAH14898.1|AAH14898 Similar to
hypothetical protein FLJ10743 [Homo sapiens]
Length = 400
Score = 104 bits (260), Expect = 5e-22
Identities = 50/105 (47%), Positives = 75/105 (70%)
Frame = -3
Query: 509 LKEHDEELWRHLEVTTKVNPQFYSFRWITLLLTQEFNFHDILHIWDTLLSDPEGPQETLL 330
LK+ D EL+ L+ + PQF++FRW+TLLL+QEF D++ IWD+L +D + + LL
Sbjct: 295 LKDKDVELYLKLQ-EQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFAD-DNRFDFLL 352
Query: 329 RICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLR 195
+CCAML+L+R +LL GDFT N++LLQ YP T++ +L A +L+
Sbjct: 353 LVCCAMLMLIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQ 397
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,410,455
Number of Sequences: 1393205
Number of extensions: 8315444
Number of successful extensions: 18139
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 17694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18108
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
