Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007080A_C01 KMC007080A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO65857.1| unknown protein [Oryza sativa (japonica cultivar-... 70 1e-11
dbj|BAB63837.1| P0459B04.21 [Oryza sativa (japonica cultivar-gro... 69 3e-11
pir||T45893 hypothetical protein F4P12.230 - Arabidopsis thalian... 68 5e-11
ref|NP_190921.2| putative protein; protein id: At3g53530.1, supp... 68 5e-11
pir||T48281 hypothetical protein T22P11.190 - Arabidopsis thalia... 68 7e-11
>gb|AAO65857.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 203
Score = 70.1 bits (170), Expect = 1e-11
Identities = 31/47 (65%), Positives = 41/47 (86%)
Frame = -3
Query: 502 VKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKVKRAEFW 362
VK+HL+KMEGVTSFNID +K+VTV+G ++P+ VL S+SKVK A+FW
Sbjct: 149 VKKHLAKMEGVTSFNIDFAAKKVTVVGDVTPLGVLNSVSKVKNAQFW 195
>dbj|BAB63837.1| P0459B04.21 [Oryza sativa (japonica cultivar-group)]
gi|28564709|dbj|BAC57624.1| P0020E09.3 [Oryza sativa
(japonica cultivar-group)]
Length = 204
Score = 68.9 bits (167), Expect = 3e-11
Identities = 28/47 (59%), Positives = 42/47 (88%)
Frame = -3
Query: 502 VKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKVKRAEFW 362
VK+H+SKMEGVTS +ID+ +K+VTV+GH++P+ VL ++SK+K A+FW
Sbjct: 141 VKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSKIKPAQFW 187
>pir||T45893 hypothetical protein F4P12.230 - Arabidopsis thaliana
gi|6729504|emb|CAB67660.1| putative protein [Arabidopsis
thaliana]
Length = 250
Score = 68.2 bits (165), Expect = 5e-11
Identities = 32/47 (68%), Positives = 39/47 (82%)
Frame = -3
Query: 502 VKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKVKRAEFW 362
VK+HLSKM+GVTSFNID SK+VTV G I+P+ VL +SKVK A+FW
Sbjct: 190 VKKHLSKMQGVTSFNIDFASKKVTVTGDITPLEVLGCLSKVKNAQFW 236
>ref|NP_190921.2| putative protein; protein id: At3g53530.1, supported by cDNA:
gi_19424069, supported by cDNA: gi_21281174 [Arabidopsis
thaliana] gi|19424070|gb|AAL87355.1| unknown protein
[Arabidopsis thaliana] gi|21281175|gb|AAM45020.1|
unknown protein [Arabidopsis thaliana]
Length = 247
Score = 68.2 bits (165), Expect = 5e-11
Identities = 32/47 (68%), Positives = 39/47 (82%)
Frame = -3
Query: 502 VKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKVKRAEFW 362
VK+HLSKM+GVTSFNID SK+VTV G I+P+ VL +SKVK A+FW
Sbjct: 187 VKKHLSKMQGVTSFNIDFASKKVTVTGDITPLEVLGCLSKVKNAQFW 233
>pir||T48281 hypothetical protein T22P11.190 - Arabidopsis thaliana
gi|7413649|emb|CAB85997.1| putative protein [Arabidopsis
thaliana]
Length = 304
Score = 67.8 bits (164), Expect = 7e-11
Identities = 30/47 (63%), Positives = 40/47 (84%)
Frame = -3
Query: 502 VKRHLSKMEGVTSFNIDVESKRVTVMGHISPVVVLESISKVKRAEFW 362
VK+HLSK++GVTS+NID +K+VTV G ++P+ VL SISKVK A+FW
Sbjct: 252 VKKHLSKLKGVTSYNIDFAAKKVTVTGDVTPLTVLASISKVKNAQFW 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,445,499
Number of Sequences: 1393205
Number of extensions: 7552273
Number of successful extensions: 16451
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 15264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16444
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
