Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007060A_C01 KMC007060A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_161175.1| hypothetical protein XP_161175 [Mus musculus] 32 4.2
gb|EAA38768.1| GLP_47_24126_27608 [Giardia lamblia ATCC 50803] 32 5.5
>ref|XP_161175.1| hypothetical protein XP_161175 [Mus musculus]
Length = 367
Score = 32.3 bits (72), Expect = 4.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = +2
Query: 194 MHVWKLLQK------ITMKPKSWWTRSNWGTSVHLWLHLSFQREFSNMHY 325
M W +L K I ++P T NW TS H+ LH+S +R+++++H+
Sbjct: 132 MESWTVLVKKDVSVQIFLRPTLLSTACNWSTSTHI-LHVSNKRDWNSVHH 180
>gb|EAA38768.1| GLP_47_24126_27608 [Giardia lamblia ATCC 50803]
Length = 1160
Score = 32.0 bits (71), Expect = 5.5
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Frame = +1
Query: 49 ATVTVTIYMSIVTGTRHVNQ*SQGDPSRTHGFY-NIPVGYF*AVRKCGLNACLETSSKNH 225
A+VT T+ + T V+ S + F N P F + KC L + S+ H
Sbjct: 56 ASVTPTVVFHVYTWALTVDGLSDARQAIIQRFSSNQPTAAFTLI-KCLLALTRQVSAAGH 114
Query: 226 D---EAKIMVDKKQLGYFSAFVASP*FSKGVFKHALLFVSAYWQTKMIPKGLLLDTRNKL 396
D E M+ Y+S F ++ + LL VS+++ P+ ++ DT+ +
Sbjct: 115 DGFGELHNMLLVLSRHYYSHFSSAGPTIYSKMEQLLLLVSSHYTELTSPEDIMTDTKLRT 174
Query: 397 YRNLFC*IHYLSFTF 441
+R+L + + F F
Sbjct: 175 FRSLLLELTPIGFEF 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,689,850
Number of Sequences: 1393205
Number of extensions: 10549039
Number of successful extensions: 20353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20326
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
