Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007052A_C01 KMC007052A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565043.1| expressed protein; protein id: At1g72450.1, sup... 48 1e-04
ref|NP_565096.1| expressed protein; protein id: At1g74950.1, sup... 46 5e-04
gb|AAM64554.1| unknown [Arabidopsis thaliana] 45 8e-04
dbj|BAC16504.1| contains ESTs C26074(C11585),AU092275(C11585)~un... 45 8e-04
gb|AAG49896.1| PnFL-2 [Ipomoea nil] 42 0.007
>ref|NP_565043.1| expressed protein; protein id: At1g72450.1, supported by cDNA:
40573., supported by cDNA: gi_13877768, supported by
cDNA: gi_16323401 [Arabidopsis thaliana]
gi|25406182|pir||F96748 unknown protein T10D10.8
[imported] - Arabidopsis thaliana
gi|12325268|gb|AAG52575.1|AC016529_6 unknown protein;
37093-38893 [Arabidopsis thaliana]
gi|13877769|gb|AAK43962.1|AF370147_1 unknown protein
[Arabidopsis thaliana] gi|16323402|gb|AAL15195.1|
unknown protein [Arabidopsis thaliana]
gi|21593614|gb|AAM65581.1| unknown [Arabidopsis
thaliana]
Length = 269
Score = 48.1 bits (113), Expect = 1e-04
Identities = 38/103 (36%), Positives = 51/103 (48%), Gaps = 8/103 (7%)
Frame = -1
Query: 647 SDSSSSEENPPKAPVVAEKLKESKAPQTNLASETSRPGNQAVRSDMRYPRRASVLKFLEK 468
S +S S N K+ VV L E + N ET + +Q V R RRAS+ +F K
Sbjct: 143 SKNSQSHMNLDKSNVVIPDLNEPTSSGNNEDQETGQQ-HQVVE---RIARRASLHRFFAK 198
Query: 467 RKERVIAKGPYQVNNPKHEGSSSGGEPE--------DQSSKHL 363
RK+R +A+ PYQVN GS +PE QSS+H+
Sbjct: 199 RKDRAVARAPYQVN---QHGSHLPPKPEMVAPSIKSGQSSQHI 238
>ref|NP_565096.1| expressed protein; protein id: At1g74950.1, supported by cDNA:
3024., supported by cDNA: gi_12744980, supported by
cDNA: gi_14423443 [Arabidopsis thaliana]
gi|25406399|pir||C96779 unknown protein F9E10.20
[imported] - Arabidopsis thaliana
gi|5882728|gb|AAD55281.1|AC008263_12 ESTs gb|T75898,
gb|R65457, gb|AA597517 and gb|AA597420 come from this
gene. [Arabidopsis thaliana]
gi|12323902|gb|AAG51928.1|AC013258_22 unknown protein;
53109-54448 [Arabidopsis thaliana]
gi|12744981|gb|AAK06870.1|AF344319_1 unknown protein
[Arabidopsis thaliana]
gi|14423444|gb|AAK62404.1|AF386959_1 Unknown protein
[Arabidopsis thaliana]
Length = 249
Score = 45.8 bits (107), Expect = 5e-04
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = -1
Query: 575 APQTNLASETSRPGNQAVRSDMRYPRRASVLKFLEKRKERVIAKGPYQVNNPKHEGSSSG 396
+P A E +P ++ ++ RRAS+ +FLEKRK+R+ +K PYQ++ E SS
Sbjct: 182 SPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQIDG-SAEASSKP 240
Query: 395 GEPEDQSSK 369
P SS+
Sbjct: 241 TNPAWLSSR 249
>gb|AAM64554.1| unknown [Arabidopsis thaliana]
Length = 249
Score = 45.1 bits (105), Expect = 8e-04
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = -1
Query: 575 APQTNLASETSRPGNQAVRSDMRYPRRASVLKFLEKRKERVIAKGPYQVNNPKHEGSSSG 396
+P A E +P ++ ++ RRAS+ +FLEKRK+R+ +K PYQ++ E SS
Sbjct: 182 SPAKTAAQEPIQPKPASLACELPIARRASLHRFLEKRKDRITSKAPYQIDG-SAEASSKP 240
Query: 395 GEPEDQSSK 369
P SS+
Sbjct: 241 TNPAWLSSR 249
>dbj|BAC16504.1| contains ESTs C26074(C11585),AU092275(C11585)~unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 244
Score = 45.1 bits (105), Expect = 8e-04
Identities = 36/99 (36%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = -1
Query: 650 ASDSSSSEENPPKAPVVAEKLKESKAPQTNLASETSRPGNQAVR--------SDMRYPRR 495
AS S AP A +KAP A +S P QA SDM R+
Sbjct: 130 ASKGSPVAPQNAAAPAPAAVTDNTKAPMAVPAPVSSLPTAQADAQKPARANASDMPIARK 189
Query: 494 ASVLKFLEKRKERVIAKGPYQVNNPKHEGSSSGGEPEDQ 378
AS+ +FLEKRK+R+ AK PYQ + + + EPE Q
Sbjct: 190 ASLHRFLEKRKDRLNAKTPYQAS--PSDATPVKKEPESQ 226
>gb|AAG49896.1| PnFL-2 [Ipomoea nil]
Length = 206
Score = 42.0 bits (97), Expect = 0.007
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 35/113 (30%)
Frame = -1
Query: 644 DSSSSEENPPKAPVV--------------AEKLKESKAPQTNLASETSRP---------- 537
DSS + +P +AP+ EK KE A TN + P
Sbjct: 74 DSSLGKADPERAPMTIFYNGQMIMFNEFPVEKAKELIAMATNTQTPNILPCADVNSVVPR 133
Query: 536 ----------GNQAVRSDMRYPRRASVLKFLEKRKERVIAK-GPYQVNNPKHE 411
GNQ SD+ RR+S+ +FLEKRK+R+ +K PYQ + E
Sbjct: 134 PAVSKVVPSFGNQRAYSDLPIARRSSLARFLEKRKDRITSKAAPYQKGKNEEE 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,935,380
Number of Sequences: 1393205
Number of extensions: 11584203
Number of successful extensions: 40185
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 39006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40130
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
