Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007034A_C01 KMC007034A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA75685.1| WREBP-2 [Nicotiana tabacum] 115 3e-25
dbj|BAB83613.1| unknown protein [Arabidopsis thaliana] 100 9e-21
gb|AAO51842.1| similar to Rattus norvegicus (Rat). ROK1-like pro... 42 0.003
ref|NP_741059.1| Predicted CDS, putative protein family member, ... 42 0.005
gb|EAA29309.1| predicted protein [Neurospora crassa] 41 0.006
>dbj|BAA75685.1| WREBP-2 [Nicotiana tabacum]
Length = 371
Score = 115 bits (287), Expect = 3e-25
Identities = 55/86 (63%), Positives = 69/86 (79%), Gaps = 1/86 (1%)
Frame = -3
Query: 494 RSNGKSQKQSKPKPNLKLPPSKMARKGSAPTPSAPLNVIKKPWPVKQETY-DEDSEETEE 318
R NGK QKQS+PKP+LK PP K+ARK S+ +P+ KKPWPVK+E Y +EDSEETEE
Sbjct: 287 RGNGKIQKQSRPKPSLKQPPLKVARKSSSASPANISIAAKKPWPVKEENYNEEDSEETEE 346
Query: 317 DRDNVEDGWRYAGNNEDDDEETEDED 240
+RD+V DGWRY G N+DDDEETE+++
Sbjct: 347 ERDDVGDGWRY-GENDDDDEETEEDE 371
>dbj|BAB83613.1| unknown protein [Arabidopsis thaliana]
Length = 339
Score = 100 bits (249), Expect = 9e-21
Identities = 55/96 (57%), Positives = 67/96 (69%), Gaps = 12/96 (12%)
Frame = -3
Query: 491 SNGKSQ---KQSKPKPNLKLPPSKMARKGSAPTPSAPLNVIKKPWPVKQETYDE------ 339
SNGK Q +QS+ KPN++ PP+K+ +KGS +P A + KKPW K ET++E
Sbjct: 246 SNGKGQTHKQQSRAKPNMRTPPAKVGKKGSTSSP-AKARIAKKPWQAK-ETFEEVEREEE 303
Query: 338 -DSEETEEDRDNVEDGWRYAGNNE--DDDEETEDED 240
DSEETEEDRDNVEDGWR+ NNE DDDEETE ED
Sbjct: 304 EDSEETEEDRDNVEDGWRFGENNEDDDDDEETEYED 339
>gb|AAO51842.1| similar to Rattus norvegicus (Rat). ROK1-like protein
[Dictyostelium discoideum]
Length = 668
Score = 42.4 bits (98), Expect = 0.003
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Frame = -3
Query: 404 TPSAPLNVIKKPWPVKQ-----ETYDEDSEETEEDRDNVEDGWRYAGNNEDDDEETEDED 240
TPS P VI K +KQ E D D+EE++ED D VED N++DDD++ EDE+
Sbjct: 52 TPSTP--VISKKDNIKQKKEEEEDNDNDNEESKEDDDFVEDD----DNDDDDDDDDEDEE 105
>ref|NP_741059.1| Predicted CDS, putative protein family member, with 2 coiled coil-4
domains, nematode specific [Caenorhabditis elegans]
gi|20803824|emb|CAD31697.1| Hypothetical protein
Y54G11A.14 [Caenorhabditis elegans]
Length = 450
Score = 41.6 bits (96), Expect = 0.005
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -3
Query: 467 SKPKP---NLKLPPSKMARKGSAPTPSAPLNVIKKPWPVKQETYDEDSEETEEDRDNVED 297
++P+P L LP S R+G ++E DED EE ED D ED
Sbjct: 2 TEPEPVVMRLSLPASGAGRRGRGGVEED-----------EEEEEDEDEEEENEDEDEDED 50
Query: 296 GWRYAGNNEDDDEETEDED 240
++EDDDEE EDED
Sbjct: 51 DDN--DDDEDDDEEEEDED 67
Score = 32.0 bits (71), Expect = 3.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 344 DEDSEETEEDRDNVEDGWRYAGNNEDDDEETED 246
DED +E EED D ED A + +DDEE E+
Sbjct: 56 DEDDDEEEEDEDEEED---EAEDEAEDDEENEE 85
Score = 31.6 bits (70), Expect = 5.0
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = -3
Query: 353 ETYDEDSEETEEDRDNVEDGWRYAGNNEDDDEETEDED 240
E DE+ E+ +E+ D ED NE+ EE EDE+
Sbjct: 57 EDDDEEEEDEDEEEDEAEDEAEDDEENEEVKEEKEDEE 94
>gb|EAA29309.1| predicted protein [Neurospora crassa]
Length = 274
Score = 41.2 bits (95), Expect = 0.006
Identities = 29/85 (34%), Positives = 37/85 (43%)
Frame = -3
Query: 494 RSNGKSQKQSKPKPNLKLPPSKMARKGSAPTPSAPLNVIKKPWPVKQETYDEDSEETEED 315
RS S S N PPSK RK SA P P + +E+ EE EED
Sbjct: 128 RSGSDSSSSSSSNSNNLSPPSKK-RKLSASGPGLP------------SSGEEEEEEEEED 174
Query: 314 RDNVEDGWRYAGNNEDDDEETEDED 240
+ ED E+++EE E+ED
Sbjct: 175 EEEDEDEGEEEEEEEEEEEEEEEED 199
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,842,908
Number of Sequences: 1393205
Number of extensions: 8682840
Number of successful extensions: 114834
Number of sequences better than 10.0: 1255
Number of HSP's better than 10.0 without gapping: 53069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90786
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
