Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006977A_C01 KMC006977A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175507.1| electron transport flavoprotein, putative; prot... 243 1e-63
ref|ZP_00091700.1| hypothetical protein [Azotobacter vinelandii] 197 7e-50
ref|NP_762435.1| Electron transfer flavoprotein, alpha subunit [... 195 5e-49
gb|AAH47845.1| Similar to electron-transfer-flavoprotein, alpha ... 194 6e-49
ref|ZP_00124278.1| hypothetical protein [Pseudomonas syringae pv... 192 3e-48
>ref|NP_175507.1| electron transport flavoprotein, putative; protein id: At1g50940.1
[Arabidopsis thaliana] gi|25282839|pir||E96546 probable
electron transport flavoprotein [imported] - Arabidopsis
thaliana gi|12321799|gb|AAG50941.1|AC079284_16 electron
transport flavoprotein, putative [Arabidopsis thaliana]
gi|26450117|dbj|BAC42178.1| unknown protein [Arabidopsis
thaliana] gi|28827356|gb|AAO50522.1| putative electron
transport flavoprotein [Arabidopsis thaliana]
Length = 363
Score = 243 bits (621), Expect = 1e-63
Identities = 118/144 (81%), Positives = 136/144 (93%)
Frame = -1
Query: 611 DEDLGKSRYISQTTQEDERPDLGNARIVVSGGRALKNAENFKLIENLAEKLGAAVGATRA 432
D+ + KSRY+ ++TQ+ ERPDLG+AR+V++GGRALK+ ENFK+IE LAEKLG AVGATRA
Sbjct: 220 DDSVSKSRYVGRSTQDTERPDLGSARVVITGGRALKSVENFKMIEKLAEKLGGAVGATRA 279
Query: 431 AVDAGFVPNELQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSQVIVAVNNDADAPIFQV 252
AVDAG+VPN+LQVGQTGKIVAPELYMAFGVSGAIQH+AG++DS+VIVAVN DADAPIFQV
Sbjct: 280 AVDAGYVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGIKDSKVIVAVNKDADAPIFQV 339
Query: 251 ADYGLVGDLFEVIPELLEKLPEKK 180
ADYGLVGDLFEVIPELLEKLPEKK
Sbjct: 340 ADYGLVGDLFEVIPELLEKLPEKK 363
>ref|ZP_00091700.1| hypothetical protein [Azotobacter vinelandii]
Length = 309
Score = 197 bits (502), Expect = 7e-50
Identities = 95/134 (70%), Positives = 116/134 (85%)
Frame = -1
Query: 605 DLGKSRYISQTTQEDERPDLGNARIVVSGGRALKNAENFKLIENLAEKLGAAVGATRAAV 426
D G SR++ + + +RP+LG+ARIVVSGGR L + ENF L+E LA+KLGAAVGA+RAAV
Sbjct: 172 DAGTSRFVGEELAKSDRPELGSARIVVSGGRGLGSGENFALLEKLADKLGAAVGASRAAV 231
Query: 425 DAGFVPNELQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSQVIVAVNNDADAPIFQVAD 246
DAGFV N++QVGQTGKIVAPELY+A G+SGAIQH+AGM+DS+VIVA+N D +APIFQVAD
Sbjct: 232 DAGFVANDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVAD 291
Query: 245 YGLVGDLFEVIPEL 204
YGLV DLFE +PEL
Sbjct: 292 YGLVADLFEAVPEL 305
>ref|NP_762435.1| Electron transfer flavoprotein, alpha subunit [Vibrio vulnificus
CMCP6] gi|27358475|gb|AAO07425.1|AE016809_187 Electron
transfer flavoprotein, alpha subunit [Vibrio vulnificus
CMCP6]
Length = 321
Score = 195 bits (495), Expect = 5e-49
Identities = 94/134 (70%), Positives = 115/134 (85%)
Frame = -1
Query: 593 SRYISQTTQEDERPDLGNARIVVSGGRALKNAENFKLIENLAEKLGAAVGATRAAVDAGF 414
S ++ E ERPDL NAR+VVSGGR L + F ++E LA+KLGAAVGA+RAAVDAG+
Sbjct: 188 SEFVGLEKVESERPDLPNARVVVSGGRGLGSKAQFAMVEQLADKLGAAVGASRAAVDAGY 247
Query: 413 VPNELQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSQVIVAVNNDADAPIFQVADYGLV 234
V N+LQVGQTGKIVAPELY+A G+SGAIQH+AGM++S+VIVA+N D DAPIFQVADYGLV
Sbjct: 248 VSNDLQVGQTGKIVAPELYIAIGISGAIQHLAGMKESKVIVAINKDPDAPIFQVADYGLV 307
Query: 233 GDLFEVIPELLEKL 192
GDLF+++PELLEK+
Sbjct: 308 GDLFDILPELLEKV 321
>gb|AAH47845.1| Similar to electron-transfer-flavoprotein, alpha polypeptide
(glutaric aciduria II) [Danio rerio]
Length = 333
Score = 194 bits (494), Expect = 6e-49
Identities = 92/137 (67%), Positives = 119/137 (86%)
Frame = -1
Query: 602 LGKSRYISQTTQEDERPDLGNARIVVSGGRALKNAENFKLIENLAEKLGAAVGATRAAVD 423
+G S ++ QT + +RP+L +A++VVSGGR LK+ +NFKL+ +LA+KL AAVGA+RAAVD
Sbjct: 195 VGVSEWLEQTLSKSDRPELTSAKVVVSGGRGLKSGDNFKLLYDLADKLNAAVGASRAAVD 254
Query: 422 AGFVPNELQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSQVIVAVNNDADAPIFQVADY 243
AG+VPN++QVGQTGKIVAPELY+A G+SGAIQH+AGM+DS+ IVA+N D +APIFQVADY
Sbjct: 255 AGYVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADY 314
Query: 242 GLVGDLFEVIPELLEKL 192
GLV DLF+V+PEL E L
Sbjct: 315 GLVADLFKVVPELTEAL 331
>ref|ZP_00124278.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 309
Score = 192 bits (488), Expect = 3e-48
Identities = 94/138 (68%), Positives = 118/138 (85%)
Frame = -1
Query: 605 DLGKSRYISQTTQEDERPDLGNARIVVSGGRALKNAENFKLIENLAEKLGAAVGATRAAV 426
D GKS ++ + + +RP+L A+IVVSGGR ++N +NF+ + LA+KLGAAVGA+RAAV
Sbjct: 172 DAGKSSFVGEELAKSDRPELTAAKIVVSGGRGMQNGDNFRHLYTLADKLGAAVGASRAAV 231
Query: 425 DAGFVPNELQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSQVIVAVNNDADAPIFQVAD 246
DAGFVPN++QVGQTGKIVAP+LY+A G+SGAIQH+AGM+DS+VIVA+N D +APIFQVAD
Sbjct: 232 DAGFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVAD 291
Query: 245 YGLVGDLFEVIPELLEKL 192
YGLV DLFE IPE LEKL
Sbjct: 292 YGLVADLFEAIPE-LEKL 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,368,962
Number of Sequences: 1393205
Number of extensions: 11665405
Number of successful extensions: 42234
Number of sequences better than 10.0: 305
Number of HSP's better than 10.0 without gapping: 37871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41132
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
