Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006936A_C01 KMC006936A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200496.1| putative protein; protein id: At5g56850.1 [Arab... 39 0.052
ref|NP_193165.1| hypothetical protein; protein id: At4g14290.1 [... 35 0.57
emb|CAB58392.1| hypothetical protein L1063.03 [Leishmania major] 33 3.7
ref|NP_608571.2| CG4577-PA [Drosophila melanogaster] gi|20152091... 32 4.8
ref|NP_645370.1| conserved hypothetical protein [Staphylococcus ... 32 8.3
>ref|NP_200496.1| putative protein; protein id: At5g56850.1 [Arabidopsis thaliana]
Length = 413
Score = 38.9 bits (89), Expect = 0.052
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -1
Query: 592 KIQEIEDSKTKTSDDNGDDDSGG-PIHQVLKIAIMVGFGILVLLTRQ 455
K IE SK + S+++ + +S G P+ QV++ I+VGF LV LTRQ
Sbjct: 367 KWTNIERSKKQKSENSAESESSGRPVGQVMRALIVVGFAGLVFLTRQ 413
>ref|NP_193165.1| hypothetical protein; protein id: At4g14290.1 [Arabidopsis
thaliana] gi|7485140|pir||F71404 hypothetical protein -
Arabidopsis thaliana gi|2244785|emb|CAB10208.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268134|emb|CAB78471.1| hypothetical protein
[Arabidopsis thaliana]
Length = 505
Score = 35.4 bits (80), Expect = 0.57
Identities = 19/74 (25%), Positives = 37/74 (49%), Gaps = 4/74 (5%)
Frame = -2
Query: 570 QRPRLLMIMEMMILEXQFIRYLKLQSWSGLGYLFSLPDREKEERRRRR----PENQLIKS 403
QR + + + ++ + F+ YL L W G ++ ++ RRRRR PE+ L++
Sbjct: 14 QRTNISIGLVLIFAKLHFLFYLNLFRWLGFIRFLTICEKYGRMRRRRRAEYNPEHDLLEQ 73
Query: 402 QLLQQSSWFLLRTL 361
+ L + W+ + L
Sbjct: 74 EFLLKGRWYQRKDL 87
>emb|CAB58392.1| hypothetical protein L1063.03 [Leishmania major]
Length = 331
Score = 32.7 bits (73), Expect = 3.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 601 KYEKIQEIEDSKTKTSDDNGDDDSGGPIHQVLKIAIMV 488
KYE ++ +E + + DD+GDDD GG + V +MV
Sbjct: 245 KYEAVELVEQLEREDGDDDGDDD-GGAVDDVRVATVMV 281
>ref|NP_608571.2| CG4577-PA [Drosophila melanogaster] gi|20152091|gb|AAM11405.1|
RE25571p [Drosophila melanogaster]
gi|22945517|gb|AAF51414.2| CG4577-PA [Drosophila
melanogaster]
Length = 445
Score = 32.3 bits (72), Expect = 4.8
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 231 SLVATLPILICISVDQNTLPPTIVKQDVKLETLNNH 124
SL+ L +++C+S+ +P +++ QD +L T NH
Sbjct: 10 SLLVVLALILCLSLPIRAVPTSVLAQDTELSTSANH 45
>ref|NP_645370.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2] gi|21203719|dbj|BAB94418.1| conserved hypothetical
protein [Staphylococcus aureus subsp. aureus MW2]
Length = 210
Score = 31.6 bits (70), Expect = 8.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 16/54 (29%)
Frame = -2
Query: 162 VKQDVKLETLNNHFTRG---------NLCFLLFMYLF-------FLSILINSSV 49
+ Q VKL NN + G NLCF+LF Y F FL +LI+ S+
Sbjct: 118 LNQKVKLSIYNNRSSNGKIMIFPSFKNLCFVLFSYFFCGGLSIMFLDVLISLSI 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,424,315
Number of Sequences: 1393205
Number of extensions: 10127133
Number of successful extensions: 33523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33424
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
