Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006913A_C01 KMC006913A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD58593.1| putative bHLH transcription factor [Arabidopsis ... 143 1e-33
dbj|BAC43050.1| putative bHLH transcription factor bHLH091 [Arab... 143 2e-33
ref|NP_180680.1| bHLH protein; protein id: At2g31220.1, supporte... 135 4e-31
gb|AAO64131.1| putative bHLH protein [Arabidopsis thaliana] 135 4e-31
ref|NP_172107.1| bHLH protein; protein id: At1g06170.1, supporte... 134 1e-30
>emb|CAD58593.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 428
Score = 143 bits (361), Expect = 1e-33
Identities = 68/103 (66%), Positives = 91/103 (88%)
Frame = -2
Query: 516 IRTSWLQRKSKDSEVDVRIIDDDVTIKLSQRKKINCLLFASKVLDELQLEIHHVAGGHVG 337
+R SWLQRKSK +EVDVRI+DD+VTIK+ Q+KKINCLL SKVLD+LQL++HHVAGG +G
Sbjct: 326 LRCSWLQRKSKVTEVDVRIVDDEVTIKVVQKKKINCLLLVSKVLDQLQLDLHHVAGGQIG 385
Query: 336 EYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAAAVPHSS 208
E+ SFL N+K EGS++YASAIANR+I+V+D ++Y A++P+S+
Sbjct: 386 EHYSFLFNTKIYEGSTIYASAIANRVIEVVD-KHYTASLPNSN 427
>dbj|BAC43050.1| putative bHLH transcription factor bHLH091 [Arabidopsis thaliana]
Length = 428
Score = 143 bits (360), Expect = 2e-33
Identities = 68/103 (66%), Positives = 91/103 (88%)
Frame = -2
Query: 516 IRTSWLQRKSKDSEVDVRIIDDDVTIKLSQRKKINCLLFASKVLDELQLEIHHVAGGHVG 337
+R SWLQRKSK +EVDVRI+DD+VTIK+ Q+KKINCLL SKVLD+LQL++HHVAGG +G
Sbjct: 326 LRCSWLQRKSKVTEVDVRIVDDEVTIKVVQKKKINCLLLVSKVLDQLQLDLHHVAGGQIG 385
Query: 336 EYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAAAVPHSS 208
E+ SFL N+K EGS++YASAIANR+I+V+D ++Y A++P+S+
Sbjct: 386 EHYSFLFNTKIYEGSTIYASAIANRVIEVVD-KHYMASLPNSN 427
>ref|NP_180680.1| bHLH protein; protein id: At2g31220.1, supported by cDNA:
gi_18026967 [Arabidopsis thaliana]
gi|25408139|pir||A84718 hypothetical protein At2g31220
[imported] - Arabidopsis thaliana
gi|4432817|gb|AAD20667.1| unknown protein [Arabidopsis
thaliana] gi|18026968|gb|AAL55717.1|AF251695_1 putative
transcription factor BHLH10 [Arabidopsis thaliana]
Length = 447
Score = 135 bits (339), Expect = 4e-31
Identities = 68/120 (56%), Positives = 89/120 (73%), Gaps = 9/120 (7%)
Frame = -2
Query: 558 ESCNIKPFGDPD---------GHIRTSWLQRKSKDSEVDVRIIDDDVTIKLSQRKKINCL 406
++ N KP + D +R SWL+RKSK +EVDVRIIDD+VTIKL Q+KKINCL
Sbjct: 322 DTVNYKPQSEVDQSCFNKNNNNSLRCSWLKRKSKVTEVDVRIIDDEVTIKLVQKKKINCL 381
Query: 405 LFASKVLDELQLEIHHVAGGHVGEYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAA 226
LF +KVLD+LQL++HHVAGG +GE+ SFL N+K EGS VYAS IA+ +++V++ QY A
Sbjct: 382 LFTTKVLDQLQLDLHHVAGGQIGEHYSFLFNTKICEGSCVYASGIADTLMEVVEKQYMEA 441
>gb|AAO64131.1| putative bHLH protein [Arabidopsis thaliana]
Length = 458
Score = 135 bits (339), Expect = 4e-31
Identities = 68/120 (56%), Positives = 89/120 (73%), Gaps = 9/120 (7%)
Frame = -2
Query: 558 ESCNIKPFGDPD---------GHIRTSWLQRKSKDSEVDVRIIDDDVTIKLSQRKKINCL 406
++ N KP + D +R SWL+RKSK +EVDVRIIDD+VTIKL Q+KKINCL
Sbjct: 333 DTVNYKPQSEVDQSCFNKNNNNSLRCSWLKRKSKVTEVDVRIIDDEVTIKLVQKKKINCL 392
Query: 405 LFASKVLDELQLEIHHVAGGHVGEYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAA 226
LF +KVLD+LQL++HHVAGG +GE+ SFL N+K EGS VYAS IA+ +++V++ QY A
Sbjct: 393 LFTTKVLDQLQLDLHHVAGGQIGEHYSFLFNTKICEGSCVYASGIADTLMEVVEKQYMEA 452
>ref|NP_172107.1| bHLH protein; protein id: At1g06170.1, supported by cDNA:
gi_20127098 [Arabidopsis thaliana]
gi|25406900|pir||C86197 hypothetical protein [imported]
- Arabidopsis thaliana
gi|8844122|gb|AAF80214.1|AC025290_3 Contains a weak
similarity to a myc-like regulatory R gene product from
Pennisetum glaucum gb|U11446 and contains a
helix-loop-helix DNA-binding PF|00010 domain.
[Arabidopsis thaliana]
gi|20127099|gb|AAM10962.1|AF488619_1 putative bHLH
transcription factor [Arabidopsis thaliana]
gi|28393705|gb|AAO42264.1| putative bHLH protein
[Arabidopsis thaliana]
Length = 420
Score = 134 bits (336), Expect = 1e-30
Identities = 64/97 (65%), Positives = 83/97 (84%)
Frame = -2
Query: 516 IRTSWLQRKSKDSEVDVRIIDDDVTIKLSQRKKINCLLFASKVLDELQLEIHHVAGGHVG 337
+R SWL+RKSK ++VDVRIIDD+VTIK+ Q+KKINCLLF SKV+D+L+L++HHVAG +G
Sbjct: 311 LRCSWLKRKSKFTDVDVRIIDDEVTIKIVQKKKINCLLFVSKVVDQLELDLHHVAGAQIG 370
Query: 336 EYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAA 226
E+ SFL N+K EGSSVYASAIA+R+++VL QY A
Sbjct: 371 EHHSFLFNAKISEGSSVYASAIADRVMEVLKKQYMEA 407
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,376,833
Number of Sequences: 1393205
Number of extensions: 8579852
Number of successful extensions: 19208
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19204
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
