Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006861A_C01 KMC006861A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF06013.1|AF193018_1 MutS homolog 7 [Arabidopsis thaliana] 139 2e-32
ref|NP_566748.1| Expressed protein; protein id: At3g24492.1, sup... 139 2e-32
emb|CAB42556.1| MUS2 protein [Zea mays] 125 3e-28
emb|CAB42555.1| MUS2 protein [Zea mays] 125 3e-28
dbj|BAB32900.1| putative DNA mismatch repair gene [Oryza sativa ... 124 5e-28
>gb|AAF06013.1|AF193018_1 MutS homolog 7 [Arabidopsis thaliana]
Length = 1109
Score = 139 bits (350), Expect = 2e-32
Identities = 68/104 (65%), Positives = 83/104 (79%), Gaps = 1/104 (0%)
Frame = -1
Query: 494 DQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSELRSE 315
DQ+LVFLYRL GACPESYGLQVALMAGIP + V AS A+Q MK+SIG F+SSELRSE
Sbjct: 1002 DQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSE 1061
Query: 314 FSTLHEEWLKTLMSISRM-EDGKSFDEDVLDTLICLWYELKTSF 186
FS+LHE+WLK+L+ ISR+ + ED DTL CLW+E+K+S+
Sbjct: 1062 FSSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
>ref|NP_566748.1| Expressed protein; protein id: At3g24492.1, supported by cDNA:
gi_6224916 [Arabidopsis thaliana]
gi|12643849|sp|Q9SMV7|MSH7_ARATH DNA mismatch repair
protein MSH6-2 (AtMsh6-2) (MutS homolog 7)
gi|3757550|emb|CAA07685.1| Msh6-2 protein [Arabidopsis
thaliana] gi|9294039|dbj|BAB01996.1| DNA repair protein
MutS [Arabidopsis thaliana]
Length = 1109
Score = 139 bits (350), Expect = 2e-32
Identities = 68/104 (65%), Positives = 83/104 (79%), Gaps = 1/104 (0%)
Frame = -1
Query: 494 DQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSELRSE 315
DQ+LVFLYRL GACPESYGLQVALMAGIP + V AS A+Q MK+SIG F+SSELRSE
Sbjct: 1002 DQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSE 1061
Query: 314 FSTLHEEWLKTLMSISRM-EDGKSFDEDVLDTLICLWYELKTSF 186
FS+LHE+WLK+L+ ISR+ + ED DTL CLW+E+K+S+
Sbjct: 1062 FSSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
>emb|CAB42556.1| MUS2 protein [Zea mays]
Length = 877
Score = 125 bits (314), Expect = 3e-28
Identities = 63/103 (61%), Positives = 77/103 (74%)
Frame = -1
Query: 491 QELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSELRSEF 312
+EL FLYRL SGACPESYGLQVA MAGIP+ V AS A Q M+ I F+SSE R+EF
Sbjct: 773 KELTFLYRLTSGACPESYGLQVAAMAGIPKSIVEKASVAGQVMRAKIAGNFKSSEQRAEF 832
Query: 311 STLHEEWLKTLMSISRMEDGKSFDEDVLDTLICLWYELKTSFR 183
STLHEEWL+ +++S M DG+ D+DV+DTL C+ ELK+ FR
Sbjct: 833 STLHEEWLRAALAVSAM-DGQPDDDDVMDTLFCIQQELKSHFR 874
>emb|CAB42555.1| MUS2 protein [Zea mays]
Length = 1184
Score = 125 bits (314), Expect = 3e-28
Identities = 63/103 (61%), Positives = 77/103 (74%)
Frame = -1
Query: 491 QELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSELRSEF 312
+EL FLYRL SGACPESYGLQVA MAGIP+ V AS A Q M+ I F+SSE R+EF
Sbjct: 1080 KELTFLYRLTSGACPESYGLQVAAMAGIPKSIVEKASVAGQVMRAKIAGNFKSSEQRAEF 1139
Query: 311 STLHEEWLKTLMSISRMEDGKSFDEDVLDTLICLWYELKTSFR 183
STLHEEWL+ +++S M DG+ D+DV+DTL C+ ELK+ FR
Sbjct: 1140 STLHEEWLRAALAVSAM-DGQPDDDDVMDTLFCIQQELKSHFR 1181
>dbj|BAB32900.1| putative DNA mismatch repair gene [Oryza sativa (japonica
cultivar-group)] gi|13161452|dbj|BAB33022.1| putative DNA
mismatch repair gene [Oryza sativa (japonica
cultivar-group)]
Length = 1252
Score = 124 bits (312), Expect = 5e-28
Identities = 60/104 (57%), Positives = 77/104 (73%)
Frame = -1
Query: 494 DQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSELRSE 315
++EL FLYRL SGACPESYGLQVA MAG+P V AS A + M+ I FRSSE R+E
Sbjct: 1147 EKELTFLYRLTSGACPESYGLQVATMAGLPRSIVERASAAGEMMRSKIAGNFRSSEERAE 1206
Query: 314 FSTLHEEWLKTLMSISRMEDGKSFDEDVLDTLICLWYELKTSFR 183
FSTLHEEW++T+++I ++D DED +DTL C+++ELK FR
Sbjct: 1207 FSTLHEEWVRTIVAIGGVKDA-HLDEDTMDTLFCVFHELKAHFR 1249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,266,190
Number of Sequences: 1393205
Number of extensions: 7448675
Number of successful extensions: 17135
Number of sequences better than 10.0: 250
Number of HSP's better than 10.0 without gapping: 16771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17129
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
