Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006798A_C01 KMC006798A_c01
(829 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566736.1| glycosyl hydrolase family 31; protein id: At3g2... 153 3e-36
dbj|BAB02784.1| alpha glucosidase-like protein [Arabidopsis thal... 153 3e-36
gb|AAC35354.1| alternative oxidase precursor [Glycine max] 104 2e-32
prf||2208475A alternative oxidase 1 101 8e-32
sp|Q07185|AOX1_SOYBN Alternative oxidase 1, mitochondrial precur... 104 8e-32
>ref|NP_566736.1| glycosyl hydrolase family 31; protein id: At3g23640.1, supported by
cDNA: gi_16648902 [Arabidopsis thaliana]
gi|16648903|gb|AAL24303.1| alpha glucosidase-like protein
[Arabidopsis thaliana] gi|27311799|gb|AAO00865.1| Unknown
protein [Arabidopsis thaliana]
Length = 991
Score = 153 bits (386), Expect = 3e-36
Identities = 65/99 (65%), Positives = 84/99 (84%)
Frame = -2
Query: 828 FCLLHPADSFISFTSIDGSTHEVFPDGGERILEGSLIPNGEWRLIDKCLGFALVHRFNVT 649
F LLHP +SF+SFTSIDGS HEV+PD G++I EG+ +P+G+W L+DK L +V+RF+V+
Sbjct: 889 FTLLHPTESFVSFTSIDGSKHEVWPDSGDQIYEGNNLPHGKWMLVDKSLNLRMVNRFDVS 948
Query: 648 EVVKCLVHWDCGTVNLELWSESRPVSKESPLRISHPYEV 532
+V KC++HWDCGTVNLELWS+ RPVSKESPL+I H YEV
Sbjct: 949 QVFKCIIHWDCGTVNLELWSKERPVSKESPLKIEHEYEV 987
>dbj|BAB02784.1| alpha glucosidase-like protein [Arabidopsis thaliana]
Length = 959
Score = 153 bits (386), Expect = 3e-36
Identities = 65/99 (65%), Positives = 84/99 (84%)
Frame = -2
Query: 828 FCLLHPADSFISFTSIDGSTHEVFPDGGERILEGSLIPNGEWRLIDKCLGFALVHRFNVT 649
F LLHP +SF+SFTSIDGS HEV+PD G++I EG+ +P+G+W L+DK L +V+RF+V+
Sbjct: 857 FTLLHPTESFVSFTSIDGSKHEVWPDSGDQIYEGNNLPHGKWMLVDKSLNLRMVNRFDVS 916
Query: 648 EVVKCLVHWDCGTVNLELWSESRPVSKESPLRISHPYEV 532
+V KC++HWDCGTVNLELWS+ RPVSKESPL+I H YEV
Sbjct: 917 QVFKCIIHWDCGTVNLELWSKERPVSKESPLKIEHEYEV 955
>gb|AAC35354.1| alternative oxidase precursor [Glycine max]
Length = 321
Score = 104 bits (259), Expect(2) = 2e-32
Identities = 49/58 (84%), Positives = 53/58 (90%)
Frame = +2
Query: 113 NSYTEFLKEMDKGKIENAPAPAIALDY*QLPPNSTLRDAVMVVRANEAHHRDVNHFAS 286
+SYTEFLKE+DKG IEN PAPAIA+DY QLPP STLRD VMVVRA+EAHHRDVNHFAS
Sbjct: 245 HSYTEFLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFAS 302
Score = 57.4 bits (137), Expect(2) = 2e-32
Identities = 29/36 (80%), Positives = 31/36 (85%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 LLIAFQ-VFFNTYFLGYLLSPKFAHREVGHLEEEAI 113
L+I Q VFFN YFLGYLLSPKFAHR VG+LEEEAI
Sbjct: 209 LVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAI 244
>prf||2208475A alternative oxidase 1
Length = 344
Score = 101 bits (252), Expect(2) = 8e-32
Identities = 48/58 (82%), Positives = 53/58 (90%)
Frame = +2
Query: 113 NSYTEFLKEMDKGKIENAPAPAIALDY*QLPPNSTLRDAVMVVRANEAHHRDVNHFAS 286
+SYTEFLKE+DKG I+N PAPAIALDY +LPP STLRD VMVVRA+EAHHRDVNHFAS
Sbjct: 268 HSYTEFLKEIDKGTIDNVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFAS 325
Score = 58.2 bits (139), Expect(2) = 8e-32
Identities = 29/36 (80%), Positives = 32/36 (88%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 LLIAFQ-VFFNTYFLGYLLSPKFAHREVGHLEEEAI 113
L++A Q VFFN YFLGYLLSPKFAHR VG+LEEEAI
Sbjct: 232 LVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAI 267
>sp|Q07185|AOX1_SOYBN Alternative oxidase 1, mitochondrial precursor
gi|395216|emb|CAA48653.1| alternative oxidase [Glycine
max] gi|740229|prf||2004454A respiratory chain terminal
oxidase
Length = 321
Score = 104 bits (259), Expect(2) = 8e-32
Identities = 49/58 (84%), Positives = 53/58 (90%)
Frame = +2
Query: 113 NSYTEFLKEMDKGKIENAPAPAIALDY*QLPPNSTLRDAVMVVRANEAHHRDVNHFAS 286
+SYTEFLKE+DKG IEN PAPAIA+DY QLPP STLRD VMVVRA+EAHHRDVNHFAS
Sbjct: 245 HSYTEFLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFAS 302
Score = 55.5 bits (132), Expect(2) = 8e-32
Identities = 28/36 (77%), Positives = 30/36 (82%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 LLIAFQ-VFFNTYFLGYLLSPKFAHREVGHLEEEAI 113
L+I Q VFFN YFLGYLLSPKFAHR G+LEEEAI
Sbjct: 209 LVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAI 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 745,140,489
Number of Sequences: 1393205
Number of extensions: 16599788
Number of successful extensions: 40034
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 38469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39989
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 42643890261
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
