Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006763A_C01 KMC006763A_c01
(422 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06443 GTP-binding protein - garden pea gi|303730|dbj|BAA02... 58 3e-08
emb|CAB61746.1| RAS-like protein [Cicer arietinum] 58 3e-08
pir||T12580 GTP-binding protein Rab11e - common ice plant (fragm... 42 0.002
emb|CAA54506.1| GTPase [Glycine max] 41 0.003
pir||T03626 GTP-binding protein Rab11e - common tobacco (fragmen... 41 0.003
>pir||T06443 GTP-binding protein - garden pea gi|303730|dbj|BAA02108.1|
GTP-binding protein [Pisum sativum]
gi|738933|prf||2001457A GTP-binding protein
Length = 215
Score = 57.8 bits (138), Expect = 3e-08
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = -2
Query: 421 DSYKAELTVNRVSLVNGPGSKKNPLSFSCCS 329
DSYKAEL+VNRVSLVNG GSKKN L+FSCCS
Sbjct: 185 DSYKAELSVNRVSLVNGAGSKKNLLNFSCCS 215
>emb|CAB61746.1| RAS-like protein [Cicer arietinum]
Length = 98
Score = 57.8 bits (138), Expect = 3e-08
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = -2
Query: 421 DSYKAELTVNRVSLVNGPGSKKNPLSFSCCS 329
DSYKAEL+VNRVSLVNG GSKKN L+FSCCS
Sbjct: 68 DSYKAELSVNRVSLVNGAGSKKNLLNFSCCS 98
>pir||T12580 GTP-binding protein Rab11e - common ice plant (fragment)
gi|1842071|gb|AAB47558.1| Nt-rab11e homolog
[Mesembryanthemum crystallinum]
Length = 167
Score = 42.0 bits (97), Expect = 0.002
Identities = 22/33 (66%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Frame = -2
Query: 421 DSYKAELTVNRVSLVNGPGSKKNP--LSFSCCS 329
DSYKAEL+VNRVSLVN K+N +S SCCS
Sbjct: 134 DSYKAELSVNRVSLVNDDKQKQNQGYISSSCCS 166
>emb|CAA54506.1| GTPase [Glycine max]
Length = 219
Score = 41.2 bits (95), Expect = 0.003
Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Frame = -2
Query: 421 DSYKAELTVNRVSLVNGPG--SKKNPLSFSCCS 329
++YKAEL+VNRVSLVN SK+N FSCCS
Sbjct: 186 ETYKAELSVNRVSLVNNGAATSKQNQTYFSCCS 218
>pir||T03626 GTP-binding protein Rab11e - common tobacco (fragment)
gi|623584|gb|AAA74116.1| putative
Length = 209
Score = 41.2 bits (95), Expect = 0.003
Identities = 21/32 (65%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -2
Query: 421 DSYKAELTVNRVSLV-NGPGSKKNPLSFSCCS 329
DSYKAEL+VNRVSLV NG K +SCCS
Sbjct: 177 DSYKAELSVNRVSLVDNGTDGSKQNQGYSCCS 208
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,508,585
Number of Sequences: 1393205
Number of extensions: 7111762
Number of successful extensions: 16864
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16850
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
