Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006740A_C01 KMC006740A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_285010.1| similar to olfactory receptor MOR203-1 [Mus mus... 33 2.0
ref|NP_701319.1| coat protein, gamma subunit, putative [Plasmodi... 32 2.6
gb|EAA19277.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium y... 32 3.3
ref|NP_472979.2| hypothetical protein [Plasmodium falciparum 3D7... 32 3.3
pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell Rece... 32 4.4
>ref|XP_285010.1| similar to olfactory receptor MOR203-1 [Mus musculus]
Length = 290
Score = 32.7 bits (73), Expect = 2.0
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Frame = -3
Query: 286 TSLWAVTCYEVVLLASISLKH*VVSC--LCLTMLI--RLCCRKQAVFFSV 149
TSLW V + + +LA+++++H V C LC T++I RLC AV +++
Sbjct: 27 TSLWKVHNHSLFILAAMAVQHYVTICIPLCYTIVISQRLCILLLAVSYAM 76
>ref|NP_701319.1| coat protein, gamma subunit, putative [Plasmodium falciparum 3D7]
gi|23496387|gb|AAN36043.1|AE014843_7 coat protein, gamma
subunit, putative [Plasmodium falciparum 3D7]
Length = 1068
Score = 32.3 bits (72), Expect = 2.6
Identities = 21/86 (24%), Positives = 42/86 (48%)
Frame = +2
Query: 62 QVHTWSNSNRNTPNTTASKLKLGVISDHQDRKKYSLFSTTQPYQHS*TKTRNNLVLQTDT 241
+VH+ N+N N N ++ I +H Y+ + +Q Y H+ + NN + + T
Sbjct: 259 EVHSEMNNNNNILNINNNRN----IFNHNIY--YNKDTYSQHYPHNNKQNINNTAISSTT 312
Query: 242 G*QNHLITGNSPQGSFSHNLYNHHEH 319
+H N+ + ++N YN+++H
Sbjct: 313 NKNHHHNINNNNNNNNNNNTYNNNDH 338
>gb|EAA19277.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 1133
Score = 32.0 bits (71), Expect = 3.3
Identities = 25/93 (26%), Positives = 46/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 80 NSNRNTPNTTASKLKLGVISDHQDRKKYSLFSTTQPYQHS*TKTRNNLVLQTDTG*QNH- 256
++N N SK++ G IS++ R + + + + + + NN + G QN+
Sbjct: 997 DNNIPANNYGHSKVENGRISNNSGRNN-NYYGSYNSHDDNTNRYMNNNKINFINGKQNNN 1055
Query: 257 --LITGNSPQGSF-SHNLYNHHEHILFLFPNFL 346
L GN+ G++ ++N YN HEH L + N +
Sbjct: 1056 YDLYRGNTTNGNYINNNNYNSHEHPLSMSNNMI 1088
>ref|NP_472979.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503365|gb|AAC71840.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 98
Score = 32.0 bits (71), Expect = 3.3
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = -2
Query: 413 FSNGSSSYFFKCYS*MKSELLTEENWEKEKECVHGGCIDYERN 285
F +S++FF Y +K + EN + EKEC H + + +N
Sbjct: 42 FGKKNSNFFFVKYVHLKDAIKAYENLKNEKECEHDFKLSFSKN 84
>pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant gi|20149851|pdb|1GOZ|B Chain B,
Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
Length = 239
Score = 31.6 bits (70), Expect = 4.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -2
Query: 398 SSYFFKCYS*MKSELLTEENWEKEKECVHGGCIDYERNFL 279
++Y+++CY K+ + +K K C++GG ++ N L
Sbjct: 87 ANYYYQCYFSKKTNDINSHQTDKRKSCMYGGVTEHNGNQL 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,861,884
Number of Sequences: 1393205
Number of extensions: 6817881
Number of successful extensions: 12660
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12642
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
