Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006716A_C01 KMC006716A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA92168.1| olfactory receptor 1-4 [Takifugu rubripes] 33 1.2
dbj|BAA92165.1| olfactory receptor 1-1 [Takifugu rubripes] 33 1.6
ref|NP_705121.1| hypothetical protein [Plasmodium falciparum 3D7... 32 2.7
dbj|BAA92169.1| olfactory receptor 1-5 [Takifugu rubripes] 32 4.6
ref|XP_162821.1| hypothetical protein XP_162821 [Mus musculus] 31 7.8
>dbj|BAA92168.1| olfactory receptor 1-4 [Takifugu rubripes]
Length = 323
Score = 33.5 bits (75), Expect = 1.2
Identities = 26/101 (25%), Positives = 42/101 (40%), Gaps = 21/101 (20%)
Frame = +2
Query: 221 LQTEITFCSLLLAEQSVFDFNANFR--CTRCT-------------------FGCLRFGCI 337
+ T ++FC + D+ FR C T F L + I
Sbjct: 168 IMTRLSFCKSVTVRSYFCDYAPTFRLACNDYTLHWAVASSGTVVNLVAPFAFILLTYAAI 227
Query: 338 DPSEF*LRIIPARFKQISACLEHPLQVPLFYLTSLLRIFLL 460
+ F ++ + +R K +S C+EH + V +FY+ L IFLL
Sbjct: 228 LVTLFLMKSVNSRMKALSTCVEHVILVAIFYI-PLFTIFLL 267
>dbj|BAA92165.1| olfactory receptor 1-1 [Takifugu rubripes]
Length = 323
Score = 33.1 bits (74), Expect = 1.6
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +2
Query: 308 TFGCLRFGCIDPSEF*LRIIPARFKQISACLEHPLQVPLFYLTSLLRIFLL 460
TF L + I + F ++ + +R K +S C+EH + V +FY+ L IF+L
Sbjct: 218 TFIILTYAAILVTLFLMKSVNSRMKALSTCVEHLVLVAIFYI-PLFTIFIL 267
>ref|NP_705121.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615366|emb|CAD52357.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 682
Score = 32.3 bits (72), Expect = 2.7
Identities = 20/59 (33%), Positives = 29/59 (48%)
Frame = -1
Query: 378 NLAGIILNQNSEGSMQPNLRHPKVHLVHRKFALKSKTDCSASNREQNVISVCRF*NENH 202
NL I + QN + +MQPN + L+H K +L S S + N + + NENH
Sbjct: 450 NLLDINVLQNQKSNMQPN----NLKLIHTKSSLSSSLKGKTSKDDLNFEQLRQHFNENH 504
>dbj|BAA92169.1| olfactory receptor 1-5 [Takifugu rubripes]
Length = 323
Score = 31.6 bits (70), Expect = 4.6
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 308 TFGCLRFGCIDPSEF*LRIIPARFKQISACLEHPLQVPLFYLTSLLRIFLL 460
TF L + I + F ++ + +R K + C+EH + V +FY+ L IF+L
Sbjct: 218 TFILLTYAAILVTLFLMKSVNSRMKALGTCVEHLVLVAIFYI-PLFTIFIL 267
>ref|XP_162821.1| hypothetical protein XP_162821 [Mus musculus]
Length = 118
Score = 30.8 bits (68), Expect = 7.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 118 NELALFVSSFLDLEYRQIDSGFLHIRINL 32
+E LF F+ L + + D+GFL+IRIN+
Sbjct: 8 DEALLFAELFVQLAFMKSDNGFLYIRINV 36
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 368,358,546
Number of Sequences: 1393205
Number of extensions: 6964826
Number of successful extensions: 14700
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14694
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
