Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006709A_C01 KMC006709A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196135.1| leucine-rich repeat transmembrane protein kinas... 165 4e-40
ref|NP_200638.1| leucine-rich repeat transmembrane protein kinas... 161 5e-39
dbj|BAB62593.1| putative receptor-like protein kinase [Oryza sat... 154 7e-37
ref|NP_187480.1| leucine-rich repeat transmembrane protein kinas... 153 1e-36
gb|AAN05336.1| Putative leucine-rich repeat transmembrane protei... 150 2e-35
>ref|NP_196135.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g05160.1 [Arabidopsis thaliana]
gi|9759257|dbj|BAB09692.1| receptor-like protein kinase
[Arabidopsis thaliana]
Length = 640
Score = 165 bits (418), Expect = 4e-40
Identities = 83/130 (63%), Positives = 105/130 (79%), Gaps = 8/130 (6%)
Frame = -2
Query: 604 ATEVTDSRKITQKSDVYSFGVLLLEMLTGKTPLRYPGYED---VVDLPRWVRSVVREEWT 434
A EV ++R+++Q+SDVYSFGV++LEMLTGKTPL PG ED V+DLPRWVRSVVREEWT
Sbjct: 508 APEVIETRRVSQRSDVYSFGVVILEMLTGKTPLTQPGLEDERVVIDLPRWVRSVVREEWT 567
Query: 433 AEVFDEELLRGQYVEEEMVQMLQIALACVAKTPDMRPRMEDVVRMVEQIKHPE-----LK 269
AEVFD ELL+ Q +EEEMVQMLQ+ALACVA+ P+ RP+ME+V RM+E ++ + +
Sbjct: 568 AEVFDVELLKFQNIEEEMVQMLQLALACVARNPESRPKMEEVARMIEDVRRLDQSQQLQQ 627
Query: 268 NRASSESGSN 239
NR SSE+ SN
Sbjct: 628 NRTSSEATSN 637
>ref|NP_200638.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g58300.1, supported by cDNA: gi_18086390
[Arabidopsis thaliana] gi|8777331|dbj|BAA96921.1|
receptor-like protein kinase [Arabidopsis thaliana]
gi|18086391|gb|AAL57654.1| unknown protein [Arabidopsis
thaliana] gi|24797034|gb|AAN64529.1| At5g58299/At5g58299
[Arabidopsis thaliana]
Length = 654
Score = 161 bits (408), Expect = 5e-39
Identities = 80/123 (65%), Positives = 103/123 (83%), Gaps = 1/123 (0%)
Frame = -2
Query: 607 RATEVTDSRKITQKSDVYSFGVLLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAE 428
RA EV ++RK T KSDVYSFGVL+LEMLTGK+P++ P +D+VDLPRWV+SVVREEWT+E
Sbjct: 523 RAPEVMETRKHTHKSDVYSFGVLILEMLTGKSPVQSPSRDDMVDLPRWVQSVVREEWTSE 582
Query: 427 VFDEELLRGQYVEEEMVQMLQIALACVAKTPDMRPRMEDVVRMVEQIKHPELK-NRASSE 251
VFD EL+R Q +EEEMVQMLQIA+ACVA+ P++RP M+DVVRM+E+I+ + + R SS+
Sbjct: 583 VFDIELMRFQNIEEEMVQMLQIAMACVAQVPEVRPTMDDVVRMIEEIRVSDSETTRPSSD 642
Query: 250 SGS 242
S
Sbjct: 643 DNS 645
>dbj|BAB62593.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)] gi|21104781|dbj|BAB93368.1| putative
receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 637
Score = 154 bits (390), Expect = 7e-37
Identities = 76/127 (59%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
Frame = -2
Query: 607 RATEVTDSRKITQKSDVYSFGVLLLEMLTGKTPLRYPGYEDVVD-LPRWVRSVVREEWTA 431
RA EV +++K TQKSDVYSFGVL+LEMLTGK PLR PG ED ++ LPRWV+SVVREEWTA
Sbjct: 508 RAPEVLETKKPTQKSDVYSFGVLVLEMLTGKAPLRSPGREDSIEHLPRWVQSVVREEWTA 567
Query: 430 EVFDEELLRGQYVEEEMVQMLQIALACVAKTPDMRPRMEDVVRMVEQIKHPELKNRASSE 251
EVFD +LLR +E+EMVQMLQ+A+ACVA PD RP+M++V+R + +I++ +R E
Sbjct: 568 EVFDVDLLRHPNIEDEMVQMLQVAMACVAAPPDQRPKMDEVIRRIVEIRNSYSGSRTPPE 627
Query: 250 SGSNDQT 230
D++
Sbjct: 628 EKQKDES 634
>ref|NP_187480.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At3g08680.1, supported by cDNA: gi_15982756
[Arabidopsis thaliana]
gi|12322735|gb|AAG51359.1|AC012562_20 putative protein
kinase; 49514-51513 [Arabidopsis thaliana]
Length = 640
Score = 153 bits (387), Expect = 1e-36
Identities = 82/123 (66%), Positives = 98/123 (79%), Gaps = 5/123 (4%)
Frame = -2
Query: 607 RATEVTDSRKITQKSDVYSFGVLLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAE 428
RA E ++RK TQKSDVYSFGVLLLEMLTGK + G+E+VVDLP+WV+SVVREEWT E
Sbjct: 507 RAPEAIETRKHTQKSDVYSFGVLLLEMLTGKAAGKTTGHEEVVDLPKWVQSVVREEWTGE 566
Query: 427 VFDEELLRGQY-VEEEMVQMLQIALACVAKTPDMRPRMEDVVRMVEQIK----HPELKNR 263
VFD EL++ Q+ VEEEMVQMLQIA+ACV+K PD RP ME+VV M+E+I+ P NR
Sbjct: 567 VFDVELIKQQHNVEEEMVQMLQIAMACVSKHPDSRPSMEEVVNMMEEIRPSGSGPGSGNR 626
Query: 262 ASS 254
ASS
Sbjct: 627 ASS 629
>gb|AAN05336.1| Putative leucine-rich repeat transmembrane protein kinase [Oryza
sativa (japonica cultivar-group)]
Length = 675
Score = 150 bits (378), Expect = 2e-35
Identities = 73/127 (57%), Positives = 96/127 (75%)
Frame = -2
Query: 607 RATEVTDSRKITQKSDVYSFGVLLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAE 428
RA EVTD R+++QK+DVYSFGVLLLE+LTGK P E+ +DLPRWV+SVVREEWTAE
Sbjct: 547 RAPEVTDIRRVSQKADVYSFGVLLLELLTGKAPTHAVVNEEGLDLPRWVQSVVREEWTAE 606
Query: 427 VFDEELLRGQYVEEEMVQMLQIALACVAKTPDMRPRMEDVVRMVEQIKHPELKNRASSES 248
VFD+ELLR Q VEEEMVQ+LQ+A+ C A+ PD RP M +V +++I+ L +R +++S
Sbjct: 607 VFDQELLRYQNVEEEMVQLLQLAIDCSAQHPDRRPSMSEVAARIDEIRRSSLGDRPATDS 666
Query: 247 GSNDQTP 227
+ P
Sbjct: 667 AGEGEEP 673
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,107,828
Number of Sequences: 1393205
Number of extensions: 10867999
Number of successful extensions: 39244
Number of sequences better than 10.0: 2750
Number of HSP's better than 10.0 without gapping: 34854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37482
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
