Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006664A_C01 KMC006664A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN08225.2| unknown protein [Oryza sativa (japonica cultivar-... 87 9e-17
ref|NP_177070.1| hypothetical protein; protein id: At1g69070.1 [... 73 1e-12
pir||A96715 protein F4N2.4 [imported] - Arabidopsis thaliana gi|... 73 1e-12
gb|EAA29241.1| hypothetical protein [Neurospora crassa] 45 4e-04
gb|EAA06282.1| agCP13117 [Anopheles gambiae str. PEST] 36 0.24
>gb|AAN08225.2| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|28875982|gb|AAO59991.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 952
Score = 87.0 bits (214), Expect = 9e-17
Identities = 43/60 (71%), Positives = 49/60 (81%)
Frame = -1
Query: 420 QKGLLVNYVKTNYFLLEVKEKERSLKEKERAEKYGRAKAFLQEQEHAFKSGQLGKGKKRR 241
+KG + K NYFL VKEKER +E+ERAEKYG+A AFLQEQEHAFKSGQLGKG+KRR
Sbjct: 892 KKGAMRELRKDNYFLSAVKEKERIKQEQERAEKYGKAMAFLQEQEHAFKSGQLGKGRKRR 951
Score = 48.9 bits (115), Expect = 3e-05
Identities = 24/58 (41%), Positives = 39/58 (66%)
Frame = -3
Query: 475 PDRERAQRRKLERDLKREPKGAARELRKDQLFLA*GEGEREVFKGKRKSREVWKS*SF 302
PDRERAQ +K+++ LK E KGA RELRKD FL+ + + + + + ++ + K+ +F
Sbjct: 874 PDRERAQMKKMKKRLKSEKKGAMRELRKDNYFLSAVKEKERIKQEQERAEKYGKAMAF 931
>ref|NP_177070.1| hypothetical protein; protein id: At1g69070.1 [Arabidopsis thaliana]
Length = 901
Score = 73.2 bits (178), Expect = 1e-12
Identities = 35/59 (59%), Positives = 46/59 (77%)
Frame = -1
Query: 417 KGLLVNYVKTNYFLLEVKEKERSLKEKERAEKYGRAKAFLQEQEHAFKSGQLGKGKKRR 241
+G + K +YF+ VK KE++ E+ERAEK+G+A AFLQEQEHAFKSGQLGKGK ++
Sbjct: 840 RGAVRELRKDSYFMSTVKAKEKAAHEQERAEKHGKAWAFLQEQEHAFKSGQLGKGKGKK 898
Score = 43.5 bits (101), Expect = 0.001
Identities = 19/34 (55%), Positives = 26/34 (75%)
Frame = -3
Query: 475 PDRERAQRRKLERDLKREPKGAARELRKDQLFLA 374
PD+ R+ +KL+R LKRE +GA RELRKD F++
Sbjct: 821 PDKYRSDLKKLKRKLKREARGAVRELRKDSYFMS 854
>pir||A96715 protein F4N2.4 [imported] - Arabidopsis thaliana
gi|6730652|gb|AAF27073.1|AC008262_22 F4N2.4 [Arabidopsis
thaliana]
Length = 891
Score = 73.2 bits (178), Expect = 1e-12
Identities = 35/59 (59%), Positives = 46/59 (77%)
Frame = -1
Query: 417 KGLLVNYVKTNYFLLEVKEKERSLKEKERAEKYGRAKAFLQEQEHAFKSGQLGKGKKRR 241
+G + K +YF+ VK KE++ E+ERAEK+G+A AFLQEQEHAFKSGQLGKGK ++
Sbjct: 830 RGAVRELRKDSYFMSTVKAKEKAAHEQERAEKHGKAWAFLQEQEHAFKSGQLGKGKGKK 888
Score = 43.5 bits (101), Expect = 0.001
Identities = 19/34 (55%), Positives = 26/34 (75%)
Frame = -3
Query: 475 PDRERAQRRKLERDLKREPKGAARELRKDQLFLA 374
PD+ R+ +KL+R LKRE +GA RELRKD F++
Sbjct: 811 PDKYRSDLKKLKRKLKREARGAVRELRKDSYFMS 844
>gb|EAA29241.1| hypothetical protein [Neurospora crassa]
Length = 911
Score = 45.1 bits (105), Expect = 4e-04
Identities = 25/54 (46%), Positives = 33/54 (60%)
Frame = -3
Query: 475 PDRERAQRRKLERDLKREPKGAARELRKDQLFLA*GEGEREVFKGKRKSREVWK 314
PDRERA+ KL + K+E KGA RELRKD F+ +RE K K+ E ++
Sbjct: 829 PDRERAELAKLRAEHKKERKGALRELRKDAAFM-----QRENLKVKKAKDEAYE 877
>gb|EAA06282.1| agCP13117 [Anopheles gambiae str. PEST]
Length = 814
Score = 35.8 bits (81), Expect = 0.24
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = -3
Query: 463 RAQRRKLERDLKREPKGAARELRKDQLFLA*GEGEREVFKGKRKSREV 320
R QRRKL++ +K+ +GA RE+R D +LA + +R + + + ++V
Sbjct: 742 REQRRKLQQKIKKVTRGAKREIRLDNEYLAKLQHKRRMESDRERQQKV 789
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,692,297
Number of Sequences: 1393205
Number of extensions: 7513576
Number of successful extensions: 24979
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 22440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24541
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
