Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006655A_C01 KMC006655A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK91822.1|AF272759_1 kinesin heavy chain [Zea mays] 117 1e-25
gb|AAK91812.1|AF272749_1 kinesin heavy chain [Zea mays] 115 4e-25
ref|NP_199064.1| kinesin heavy chain-like protein; protein id: A... 108 4e-23
ref|NP_201432.1| kinesin heavy chain DNA binding protein-like; p... 98 8e-20
ref|NP_195606.1| kinesin like protein; protein id: At4g38950.1 [... 96 4e-19
>gb|AAK91822.1|AF272759_1 kinesin heavy chain [Zea mays]
Length = 897
Score = 117 bits (293), Expect = 1e-25
Identities = 53/97 (54%), Positives = 80/97 (81%)
Frame = -3
Query: 598 SSMRSLKRERQMLSKPMQKKLSKSERMNLYLRWVLRLSTKHRSLQLAHRLWSDTKDMEHI 419
SS + L+RER+ML + MQK+L+ ER +LY +W + LS+K R LQ+A RLW++T+D+EH+
Sbjct: 789 SSAKKLQREREMLCRQMQKRLTIQERESLYTKWGVSLSSKRRRLQVARRLWTETRDLEHV 848
Query: 418 RDSAALVAKLVGSVEPEQAFKEMFGLNFAPRPSSRKS 308
R+SA+LVA+L+G +EP +A +EMFGL+FAP+ S+R+S
Sbjct: 849 RESASLVARLIGLLEPGKALREMFGLSFAPQQSTRRS 885
>gb|AAK91812.1|AF272749_1 kinesin heavy chain [Zea mays]
Length = 766
Score = 115 bits (289), Expect = 4e-25
Identities = 54/107 (50%), Positives = 78/107 (72%), Gaps = 4/107 (3%)
Frame = -3
Query: 607 TPESSMRSLKRERQMLSKPMQKKLSKSERMNLYLRWVLRLSTKHRSLQLAHRLWSDTKDM 428
+P +S + L+RER+ML++ MQK+L+ ER LY +W + L +K R LQ+A RLW++ +D+
Sbjct: 652 SPAASAKKLQREREMLARQMQKRLTAEERERLYTKWGISLDSKKRKLQVARRLWTEAEDL 711
Query: 427 EHIRDSAALVAKLVGSVEPEQAFKEMFGLNFAPR----PSSRKSFGW 299
EH+R+SA+LVAKL+G EP Q +EMFGL+FAP+ P R S GW
Sbjct: 712 EHVRESASLVAKLIGLQEPGQVLREMFGLSFAPQQQPPPRRRSSNGW 758
>ref|NP_199064.1| kinesin heavy chain-like protein; protein id: At5g42490.1
[Arabidopsis thaliana] gi|9759485|dbj|BAB10490.1| kinesin
heavy chain-like protein [Arabidopsis thaliana]
Length = 1087
Score = 108 bits (271), Expect = 4e-23
Identities = 48/99 (48%), Positives = 77/99 (77%)
Frame = -3
Query: 595 SMRSLKRERQMLSKPMQKKLSKSERMNLYLRWVLRLSTKHRSLQLAHRLWSDTKDMEHIR 416
++++L RE++ +SK + KK ++R+ LY +W + +++K RSLQ+AH+LW++T+DM+HI+
Sbjct: 976 TVKALTREKEWISKQLPKKFPWNQRIGLYQKWGVEVNSKQRSLQVAHKLWTNTQDMDHIK 1035
Query: 415 DSAALVAKLVGSVEPEQAFKEMFGLNFAPRPSSRKSFGW 299
+SA+LVAKL+G VEP + KEMFGL+ PR + KS GW
Sbjct: 1036 ESASLVAKLLGFVEPSRMPKEMFGLSLLPRTENVKSSGW 1074
>ref|NP_201432.1| kinesin heavy chain DNA binding protein-like; protein id: At5g66310.1
[Arabidopsis thaliana] gi|10177425|dbj|BAB10710.1|
kinesin heavy chain DNA binding protein-like [Arabidopsis
thaliana]
Length = 1037
Score = 98.2 bits (243), Expect = 8e-20
Identities = 51/90 (56%), Positives = 62/90 (68%)
Frame = -3
Query: 622 DGRTLTPESSMRSLKRERQMLSKPMQKKLSKSERMNLYLRWVLRLSTKHRSLQLAHRLWS 443
DG +T S R+L RER LSK MQ+KLSK ER NL+LRW + L+T HR +QLA RLWS
Sbjct: 945 DGNNMTLISCTRALTRERYKLSKLMQRKLSKEERENLFLRWGIGLNTNHRRVQLARRLWS 1004
Query: 442 DTKDMEHIRDSAALVAKLVGSVEPEQAFKE 353
D KDM H+R+SA+LV KL G + F E
Sbjct: 1005 DYKDMGHVRESASLVGKLNGHGNGKSDFDE 1034
>ref|NP_195606.1| kinesin like protein; protein id: At4g38950.1 [Arabidopsis thaliana]
gi|7485797|pir||T06055 hypothetical protein F19H22.50 -
Arabidopsis thaliana gi|4539314|emb|CAB38815.1| kinesin
like protein [Arabidopsis thaliana]
gi|7270878|emb|CAB80558.1| kinesin like protein
[Arabidopsis thaliana]
Length = 834
Score = 95.9 bits (237), Expect = 4e-19
Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = -3
Query: 625 EDGRTLTPESSMRSLKRERQMLSKPMQKKLSKSERMNLYLRWVLRLSTKHRSLQLAHRLW 446
E G TLT SS + L RER+MLSK + K+ S ER +Y ++ + +++K R LQL + LW
Sbjct: 716 EGGETLTLASSRKELHRERKMLSKLVGKRFSGEERKRIYHKFGIAINSKRRRLQLVNELW 775
Query: 445 SDTKDMEHIRDSAALVAKLVGSVEPEQAFKEMFGLNFAPRP--SSRKSFGWTASV 287
S+ KDM + +SA +VAKLV E +A KEMFGL F P ++R+S W S+
Sbjct: 776 SNPKDMTQVMESADVVAKLVRFAEQGRAMKEMFGLTFTPPSFLTTRRSHSWRKSM 830
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,603,036
Number of Sequences: 1393205
Number of extensions: 10827221
Number of successful extensions: 25192
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 24368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25159
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
