Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006639A_C01 KMC006639A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567415.1| Expressed protein; protein id: At4g13980.1, sup... 90 1e-17
pir||G71400 probable heat shock transcription factor - Arabidops... 90 1e-17
gb|AAL12248.1| heat shock transcription factor [Phaseolus acutif... 50 2e-05
dbj|BAB56047.1| putative heat shock factor [Oryza sativa (japoni... 49 5e-05
dbj|BAA83711.1| heat shock factor [Nicotiana tabacum] 48 6e-05
>ref|NP_567415.1| Expressed protein; protein id: At4g13980.1, supported by cDNA:
gi_14517386 [Arabidopsis thaliana]
gi|14517387|gb|AAK62584.1| AT4g13980/dl3030c
[Arabidopsis thaliana] gi|24111373|gb|AAN46810.1|
At4g13980/dl3030c [Arabidopsis thaliana]
Length = 466
Score = 90.1 bits (222), Expect = 1e-17
Identities = 58/129 (44%), Positives = 72/129 (54%)
Frame = -1
Query: 533 LASCPLPANRNSYSARSPQIDCQEIGKIAESRFYASGKESDIGVSSNQNVANEVTXLAAP 354
LAS PLP S A++ + QE+ + S E + G Q +A
Sbjct: 355 LASAPLPDKTASQIAKTT-LKSQELNF---NSIETSASEKNRG---RQEIA--------- 398
Query: 353 TPSSNQVSPAAPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRSVHGISRN 174
+Q + A P RVNDVFWEQFLTERPG SDNEEA S YR NPY+EQEE R+ + RN
Sbjct: 399 -VGGSQANAAPPARVNDVFWEQFLTERPGSSDNEEASSTYRGNPYEEQEEKRNGSMMLRN 457
Query: 173 IKGMDQLTL 147
K ++QLTL
Sbjct: 458 TKNIEQLTL 466
>pir||G71400 probable heat shock transcription factor - Arabidopsis thaliana
gi|2244754|emb|CAB10177.1| heat shock transcription
factor like protein [Arabidopsis thaliana]
gi|7268102|emb|CAB78440.1| heat shock transcription
factor like protein [Arabidopsis thaliana]
Length = 834
Score = 90.1 bits (222), Expect = 1e-17
Identities = 58/129 (44%), Positives = 72/129 (54%)
Frame = -1
Query: 533 LASCPLPANRNSYSARSPQIDCQEIGKIAESRFYASGKESDIGVSSNQNVANEVTXLAAP 354
LAS PLP S A++ + QE+ + S E + G Q +A
Sbjct: 723 LASAPLPDKTASQIAKTT-LKSQELNF---NSIETSASEKNRG---RQEIA--------- 766
Query: 353 TPSSNQVSPAAPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRSVHGISRN 174
+Q + A P RVNDVFWEQFLTERPG SDNEEA S YR NPY+EQEE R+ + RN
Sbjct: 767 -VGGSQANAAPPARVNDVFWEQFLTERPGSSDNEEASSTYRGNPYEEQEEKRNGSMMLRN 825
Query: 173 IKGMDQLTL 147
K ++QLTL
Sbjct: 826 TKNIEQLTL 834
>gb|AAL12248.1| heat shock transcription factor [Phaseolus acutifolius]
Length = 402
Score = 50.1 bits (118), Expect = 2e-05
Identities = 34/102 (33%), Positives = 50/102 (48%), Gaps = 4/102 (3%)
Frame = -1
Query: 491 ARSPQIDCQEIGKIAESRFYASGKESDIGVSSNQNVANEVTXLAAPTPSSNQVSPA---- 324
A SP I C ++ + SS ++ +E T A P P +++ PA
Sbjct: 284 ADSPSISCAQLDVDVRPK------------SSGIDMNSEPTAAAVPDPLASKDQPAGITV 331
Query: 323 APDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGR 198
A VNDVFWEQFLTE PG S+ +E + + R + + EG+
Sbjct: 332 AATGVNDVFWEQFLTEDPGASETQE-VQSERKDCDGRKNEGK 372
>dbj|BAB56047.1| putative heat shock factor [Oryza sativa (japonica cultivar-group)]
Length = 440
Score = 48.5 bits (114), Expect = 5e-05
Identities = 40/112 (35%), Positives = 53/112 (46%), Gaps = 7/112 (6%)
Frame = -1
Query: 503 NSYSAR--SPQIDCQEIGKIAE--SRFYASGKESDIGVSSNQNVANEVTXLAAPTPSSNQ 336
+S+S+R + C E I + SR K S+I V+S V P
Sbjct: 309 DSHSSRDVAESTSCAESPPIPQMHSRVDTRAKVSEIDVNSEPAVTETGPSRDQPAEEPPA 368
Query: 335 VSPAAPDRVNDVFWEQFLTERPGCSD-NEEAISNYR--ANPYDEQEEGRSVH 189
V+P A ND FW+QFLTE+PG SD ++EA S R N DE + G H
Sbjct: 369 VTPGA----NDGFWQQFLTEQPGSSDAHQEAQSERRDGGNKVDEMKSGDRQH 416
>dbj|BAA83711.1| heat shock factor [Nicotiana tabacum]
Length = 408
Score = 48.1 bits (113), Expect = 6e-05
Identities = 36/114 (31%), Positives = 54/114 (46%), Gaps = 2/114 (1%)
Frame = -1
Query: 527 SCPLPANRNSYSARSPQIDCQEIGKIAESRFYASGKESDIGVSSNQNVANEVTXLAAPTP 348
+C L + ++ A SP I ++ K SDI ++S N AN +AAP
Sbjct: 275 NCSLELDESTSCADSPAISYTQLN------VDVGPKASDIDMNSEPN-ANTNPEVAAPED 327
Query: 347 SSNQVSPAA--PDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRSV 192
+ P VND+FWEQFLTE PG D E + + R + +++ E + V
Sbjct: 328 QAAVAGTTTNVPTGVNDIFWEQFLTENPGSVDASE-VQSERKDIGNKKNESKPV 380
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,283,476
Number of Sequences: 1393205
Number of extensions: 8967345
Number of successful extensions: 24920
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 24398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24915
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
