Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006615A_C01 KMC006615A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09481.1| contains similarity to transcription regulator~g... 286 1e-76
gb|AAK43900.1|AF370523_1 Unknown protein [Arabidopsis thaliana] ... 286 1e-76
ref|NP_568361.1| putative protein; protein id: At5g18230.1, supp... 286 1e-76
gb|AAF29828.1|AF180474_1 Not3p [Homo sapiens] 186 2e-46
ref|NP_055331.1| CCR4-NOT transcription complex, subunit 3; NOT3... 186 2e-46
>dbj|BAB09481.1| contains similarity to transcription regulator~gene_id:MRG7.19
[Arabidopsis thaliana]
Length = 889
Score = 286 bits (732), Expect = 1e-76
Identities = 142/149 (95%), Positives = 147/149 (98%)
Frame = +2
Query: 155 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 334
MGASRKLQGEIDRVLKKVQEGV+VFDSIWNKVYDTDN NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD 60
Query: 335 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 514
QIKTWIQSSEIKDKKVSASYEQ+LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQPK
Sbjct: 61 QIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPK 120
Query: 515 TDPKEKAKSESREWLNNVVGELESQIDSF 601
TDPKEKAKSE+R+WLNNVV ELESQIDSF
Sbjct: 121 TDPKEKAKSETRDWLNNVVSELESQIDSF 149
>gb|AAK43900.1|AF370523_1 Unknown protein [Arabidopsis thaliana] gi|25084156|gb|AAN72188.1|
Unknown protein [Arabidopsis thaliana]
Length = 843
Score = 286 bits (732), Expect = 1e-76
Identities = 142/149 (95%), Positives = 147/149 (98%)
Frame = +2
Query: 155 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 334
MGASRKLQGEIDRVLKKVQEGV+VFDSIWNKVYDTDN NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD 60
Query: 335 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 514
QIKTWIQSSEIKDKKVSASYEQ+LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQPK
Sbjct: 61 QIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPK 120
Query: 515 TDPKEKAKSESREWLNNVVGELESQIDSF 601
TDPKEKAKSE+R+WLNNVV ELESQIDSF
Sbjct: 121 TDPKEKAKSETRDWLNNVVSELESQIDSF 149
>ref|NP_568361.1| putative protein; protein id: At5g18230.1, supported by cDNA:
gi_13877644 [Arabidopsis thaliana]
Length = 843
Score = 286 bits (732), Expect = 1e-76
Identities = 142/149 (95%), Positives = 147/149 (98%)
Frame = +2
Query: 155 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 334
MGASRKLQGEIDRVLKKVQEGV+VFDSIWNKVYDTDN NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD 60
Query: 335 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 514
QIKTWIQSSEIKDKKVSASYEQ+LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQPK
Sbjct: 61 QIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPK 120
Query: 515 TDPKEKAKSESREWLNNVVGELESQIDSF 601
TDPKEKAKSE+R+WLNNVV ELESQIDSF
Sbjct: 121 TDPKEKAKSETRDWLNNVVSELESQIDSF 149
>gb|AAF29828.1|AF180474_1 Not3p [Homo sapiens]
Length = 609
Score = 186 bits (473), Expect = 2e-46
Identities = 93/149 (62%), Positives = 110/149 (73%)
Frame = +2
Query: 155 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 334
M RKLQGEIDR LKKV EGVE F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 335 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 514
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 515 TDPKEKAKSESREWLNNVVGELESQIDSF 601
DP +K K E +WL N + L Q+D F
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQF 142
>ref|NP_055331.1| CCR4-NOT transcription complex, subunit 3; NOT3 (negative regulator
of transcription 3, yeast) homolog [Homo sapiens]
gi|3327196|dbj|BAA31666.1| KIAA0691 protein [Homo
sapiens] gi|16741277|gb|AAH16474.1|AAH16474 CCR4-NOT
transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 186 bits (473), Expect = 2e-46
Identities = 93/149 (62%), Positives = 110/149 (73%)
Frame = +2
Query: 155 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 334
M RKLQGEIDR LKKV EGVE F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 335 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 514
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 515 TDPKEKAKSESREWLNNVVGELESQIDSF 601
DP +K K E +WL N + L Q+D F
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQF 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,372,893
Number of Sequences: 1393205
Number of extensions: 9514813
Number of successful extensions: 42569
Number of sequences better than 10.0: 427
Number of HSP's better than 10.0 without gapping: 39537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42204
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
