Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006585A_C01 KMC006585A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197204.1| Exportin1 (XPO1) protein; protein id: At5g17020... 265 3e-70
gb|AAK56267.1|AF367278_1 AT3g03110/T17B22_20 [Arabidopsis thalia... 251 6e-66
gb|AAF26113.1|AC012328_16 putative exportin1 (XPO1) protein [Ara... 251 6e-66
ref|NP_566193.1| putative exportin1 (XPO1) protein; protein id: ... 251 6e-66
emb|CAC39223.1| exportin 1b [Arabidopsis thaliana] 248 5e-65
>ref|NP_197204.1| Exportin1 (XPO1) protein; protein id: At5g17020.1, supported by cDNA:
gi_15810122, supported by cDNA: gi_20465600 [Arabidopsis
thaliana] gi|11357286|pir||T51557 Exportin1 (XPO1)
protein - Arabidopsis thaliana (fragment)
gi|25347852|pir||T52638 exportin 1 [validated] -
Arabidopsis thaliana gi|5931694|emb|CAB56597.1| Exportin1
(XPO1) protein [Arabidopsis thaliana]
gi|7671510|emb|CAB89280.1| Exportin1 (XPO1) protein
[Arabidopsis thaliana] gi|9755703|emb|CAC01715.1|
Exportin1 (XPO1) protein [Arabidopsis thaliana]
gi|15810123|gb|AAL07205.1| putative exportin1 protein
XPO1 [Arabidopsis thaliana] gi|20465601|gb|AAM20283.1|
putative Exportin1 (XPO1) protein [Arabidopsis thaliana]
Length = 1075
Score = 265 bits (678), Expect = 3e-70
Identities = 131/149 (87%), Positives = 139/149 (92%)
Frame = -3
Query: 593 EIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVLEYTI 414
EIFAVLTDTFHKPGFKLHVLVLQ LFCL E+GALTEPLWDA T PYPYP N AFV EYTI
Sbjct: 927 EIFAVLTDTFHKPGFKLHVLVLQQLFCLPESGALTEPLWDATTVPYPYPDNVAFVREYTI 986
Query: 413 KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA 234
KLLS+SFPNMTAAEVTQFVNGL+ES ND S FKN+IRDFLVQSKEFSAQDNKDLYAEEAA
Sbjct: 987 KLLSSSFPNMTAAEVTQFVNGLYESRNDPSGFKNNIRDFLVQSKEFSAQDNKDLYAEEAA 1046
Query: 233 AQRERERQRMLSVPGLIAPSELQDEMLDS 147
AQRERERQRMLS+PGLIAP+E+QDEM+DS
Sbjct: 1047 AQRERERQRMLSIPGLIAPNEIQDEMVDS 1075
>gb|AAK56267.1|AF367278_1 AT3g03110/T17B22_20 [Arabidopsis thaliana]
gi|28416447|gb|AAO42754.1| At3g03110/T17B22_20
[Arabidopsis thaliana]
Length = 356
Score = 251 bits (640), Expect = 6e-66
Identities = 121/149 (81%), Positives = 135/149 (90%)
Frame = -3
Query: 593 EIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVLEYTI 414
E+FAVLTDTFHKPGFKLHVLVLQHLF L E+G+L EPLWDAAT P+PY +N AFVLEYT
Sbjct: 208 EVFAVLTDTFHKPGFKLHVLVLQHLFSLVESGSLAEPLWDAATVPHPYSNNVAFVLEYTT 267
Query: 413 KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA 234
KLLS+SFPNMT EVTQFVNGL+ES ND+ FK++IRDFL+QSKEFSAQDNKDLYAEEAA
Sbjct: 268 KLLSSSFPNMTTTEVTQFVNGLYESRNDVGRFKDNIRDFLIQSKEFSAQDNKDLYAEEAA 327
Query: 233 AQRERERQRMLSVPGLIAPSELQDEMLDS 147
AQ ERERQRMLS+PGLIAPSE+QD+M DS
Sbjct: 328 AQMERERQRMLSIPGLIAPSEIQDDMADS 356
>gb|AAF26113.1|AC012328_16 putative exportin1 (XPO1) protein [Arabidopsis thaliana]
Length = 1022
Score = 251 bits (640), Expect = 6e-66
Identities = 121/149 (81%), Positives = 135/149 (90%)
Frame = -3
Query: 593 EIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVLEYTI 414
E+FAVLTDTFHKPGFKLHVLVLQHLF L E+G+L EPLWDAAT P+PY +N AFVLEYT
Sbjct: 874 EVFAVLTDTFHKPGFKLHVLVLQHLFSLVESGSLAEPLWDAATVPHPYSNNVAFVLEYTT 933
Query: 413 KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA 234
KLLS+SFPNMT EVTQFVNGL+ES ND+ FK++IRDFL+QSKEFSAQDNKDLYAEEAA
Sbjct: 934 KLLSSSFPNMTTTEVTQFVNGLYESRNDVGRFKDNIRDFLIQSKEFSAQDNKDLYAEEAA 993
Query: 233 AQRERERQRMLSVPGLIAPSELQDEMLDS 147
AQ ERERQRMLS+PGLIAPSE+QD+M DS
Sbjct: 994 AQMERERQRMLSIPGLIAPSEIQDDMADS 1022
>ref|NP_566193.1| putative exportin1 (XPO1) protein; protein id: At3g03110.1
[Arabidopsis thaliana]
Length = 1067
Score = 251 bits (640), Expect = 6e-66
Identities = 121/149 (81%), Positives = 135/149 (90%)
Frame = -3
Query: 593 EIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVLEYTI 414
E+FAVLTDTFHKPGFKLHVLVLQHLF L E+G+L EPLWDAAT P+PY +N AFVLEYT
Sbjct: 919 EVFAVLTDTFHKPGFKLHVLVLQHLFSLVESGSLAEPLWDAATVPHPYSNNVAFVLEYTT 978
Query: 413 KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA 234
KLLS+SFPNMT EVTQFVNGL+ES ND+ FK++IRDFL+QSKEFSAQDNKDLYAEEAA
Sbjct: 979 KLLSSSFPNMTTTEVTQFVNGLYESRNDVGRFKDNIRDFLIQSKEFSAQDNKDLYAEEAA 1038
Query: 233 AQRERERQRMLSVPGLIAPSELQDEMLDS 147
AQ ERERQRMLS+PGLIAPSE+QD+M DS
Sbjct: 1039 AQMERERQRMLSIPGLIAPSEIQDDMADS 1067
>emb|CAC39223.1| exportin 1b [Arabidopsis thaliana]
Length = 1076
Score = 248 bits (632), Expect = 5e-65
Identities = 120/149 (80%), Positives = 134/149 (89%)
Frame = -3
Query: 593 EIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVLEYTI 414
E+FAVLTDTFHK GFKLHVLVLQHLF L E+G+L EPLWDAAT P+PY +N AFVLEYT
Sbjct: 928 EVFAVLTDTFHKSGFKLHVLVLQHLFSLVESGSLAEPLWDAATVPHPYSNNVAFVLEYTT 987
Query: 413 KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA 234
KLLS+SFPNMT EVTQFVNGL+ES ND+ FK++IRDFL+QSKEFSAQDNKDLYAEEAA
Sbjct: 988 KLLSSSFPNMTTTEVTQFVNGLYESRNDVGRFKDNIRDFLIQSKEFSAQDNKDLYAEEAA 1047
Query: 233 AQRERERQRMLSVPGLIAPSELQDEMLDS 147
AQ ERERQRMLS+PGLIAPSE+QD+M DS
Sbjct: 1048 AQMERERQRMLSIPGLIAPSEIQDDMADS 1076
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,003,088
Number of Sequences: 1393205
Number of extensions: 9324962
Number of successful extensions: 26167
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 25519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26118
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
