Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006564A_C01 KMC006564A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565084.1| leucine-rich repeat transmembrane protein kinas... 170 1e-41
pir||C96772 probable receptor protein kinase F1M20.4 [imported] ... 170 1e-41
dbj|BAC55707.1| P0453E05.23 [Oryza sativa (japonica cultivar-gro... 130 1e-29
dbj|BAB91929.1| putative receptor-like kinase [Oryza sativa (jap... 87 1e-16
gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cult... 84 1e-15
>ref|NP_565084.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g74360.1 [Arabidopsis thaliana]
Length = 1106
Score = 170 bits (430), Expect = 1e-41
Identities = 82/114 (71%), Positives = 94/114 (81%)
Frame = -3
Query: 588 MVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATARRAVDGGEECLVEWARRVTRHG 409
++AGT+GYVAPEYGQTWQATT+GDVYS+GVL MELAT RRAVDGGEECLVEWARRV
Sbjct: 976 VIAGTIGYVAPEYGQTWQATTRGDVYSYGVLTMELATGRRAVDGGEECLVEWARRVMTGN 1035
Query: 408 SSRRSVPVLLMGTGLVGGVEEMGELLRIGVKCTSEVPHARPNMKEVLAMLVKIS 247
+ + P+ L GT G E+M ELL+IGVKCT++ P ARPNMKEVLAMLVKIS
Sbjct: 1036 MTAKGSPITLSGTKPGNGAEQMTELLKIGVKCTADHPQARPNMKEVLAMLVKIS 1089
>pir||C96772 probable receptor protein kinase F1M20.4 [imported] - Arabidopsis
thaliana gi|12324800|gb|AAG52362.1|AC011765_14 putative
receptor protein kinase; 10992-14231 [Arabidopsis
thaliana]
Length = 1079
Score = 170 bits (430), Expect = 1e-41
Identities = 82/114 (71%), Positives = 94/114 (81%)
Frame = -3
Query: 588 MVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATARRAVDGGEECLVEWARRVTRHG 409
++AGT+GYVAPEYGQTWQATT+GDVYS+GVL MELAT RRAVDGGEECLVEWARRV
Sbjct: 949 VIAGTIGYVAPEYGQTWQATTRGDVYSYGVLTMELATGRRAVDGGEECLVEWARRVMTGN 1008
Query: 408 SSRRSVPVLLMGTGLVGGVEEMGELLRIGVKCTSEVPHARPNMKEVLAMLVKIS 247
+ + P+ L GT G E+M ELL+IGVKCT++ P ARPNMKEVLAMLVKIS
Sbjct: 1009 MTAKGSPITLSGTKPGNGAEQMTELLKIGVKCTADHPQARPNMKEVLAMLVKIS 1062
>dbj|BAC55707.1| P0453E05.23 [Oryza sativa (japonica cultivar-group)]
Length = 1109
Score = 130 bits (328), Expect = 1e-29
Identities = 68/119 (57%), Positives = 87/119 (72%), Gaps = 1/119 (0%)
Frame = -3
Query: 588 MVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATARRAVDGG-EECLVEWARRVTRH 412
MVAGTVGYVAPEYGQTW+ATTKGDVYS+GVL+MELAT RRAVDGG EECLVEW+RR+ +
Sbjct: 993 MVAGTVGYVAPEYGQTWRATTKGDVYSYGVLLMELATGRRAVDGGEEECLVEWSRRMAQE 1052
Query: 411 GSSRRSVPVLLMGTGLVGGVEEMGELLRIGVKCTSEVPHARPNMKEVLAMLVKISNLRG 235
G R +G V + ++L +G++CT++ P RP+M +VLA L+ I+ G
Sbjct: 1053 GWPAREAAA---SSGAV-----LWDMLMLGMRCTADSPQERPDMPDVLAALLDIAGSGG 1103
>dbj|BAB91929.1| putative receptor-like kinase [Oryza sativa (japonica
cultivar-group)]
Length = 1063
Score = 87.4 bits (215), Expect = 1e-16
Identities = 52/115 (45%), Positives = 68/115 (58%), Gaps = 2/115 (1%)
Frame = -3
Query: 585 VAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATARRAVDGGEE-CLVEWARRVTRHG 409
VAG+ GY+APE G T + K DVYSFGV+++EL T + A DGGE L +WAR H
Sbjct: 899 VAGSFGYMAPECGYTRKVDEKVDVYSFGVVLLELTTGKAANDGGEHGSLADWAR---HHY 955
Query: 408 SSRRSVP-VLLMGTGLVGGVEEMGELLRIGVKCTSEVPHARPNMKEVLAMLVKIS 247
S S+P G +E+ + R+GV CT P +RP MK+VL +LVK S
Sbjct: 956 QSGESIPDATDQCIRYAGYSDEIEVVFRLGVMCTGATPASRPTMKDVLQILVKCS 1010
>gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1030
Score = 84.3 bits (207), Expect = 1e-15
Identities = 48/124 (38%), Positives = 71/124 (56%), Gaps = 3/124 (2%)
Frame = -3
Query: 588 MVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATARRAVD---GGEECLVEWARRVT 418
+VAG+ GY+APEYG T + K D+YSFGV++MEL T RR ++ G + +V W R
Sbjct: 883 VVAGSYGYIAPEYGYTLKVDQKSDIYSFGVVLMELLTGRRPIEPEYGESQDIVGWIRERL 942
Query: 417 RHGSSRRSVPVLLMGTGLVGGVEEMGELLRIGVKCTSEVPHARPNMKEVLAMLVKISNLR 238
R + + +G + EEM +LR+ V CT++ P RP M++V+ ML + R
Sbjct: 943 RSNTGVEELLDASVGGRVDHVREEMLLVLRVAVLCTAKSPKDRPTMRDVVTMLGEAKPRR 1002
Query: 237 GDSS 226
SS
Sbjct: 1003 KSSS 1006
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,040,641
Number of Sequences: 1393205
Number of extensions: 13038972
Number of successful extensions: 51265
Number of sequences better than 10.0: 2189
Number of HSP's better than 10.0 without gapping: 46135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50107
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
