Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006521A_C01 KMC006521A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase... 117 1e-25
ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase... 108 4e-23
dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana] 108 4e-23
ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase... 99 5e-20
gb|AAL73069.1|AC090873_15 Putative alpha-mannosidase [Oryza sati... 86 3e-16
>ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At3g26720.1, supported by cDNA: gi_14517402 [Arabidopsis
thaliana] gi|1888357|emb|CAA66821.1| alpha-mannosidase
[Arabidopsis thaliana] gi|1890154|emb|CAA72432.1|
alpha-mannosidase precursor [Arabidopsis thaliana]
gi|11994305|dbj|BAB01735.1| alpha-mannosidase
[Arabidopsis thaliana] gi|14517403|gb|AAK62592.1|
AT3g26720/MLJ15_12 [Arabidopsis thaliana]
gi|21360397|gb|AAM47314.1| AT3g26720/MLJ15_12
[Arabidopsis thaliana]
Length = 1019
Score = 117 bits (293), Expect = 1e-25
Identities = 58/91 (63%), Positives = 73/91 (79%)
Frame = -1
Query: 604 LYEIEEDTDFSVMTNVELKKIFPGKKIKEVKEMNLSANQERTEMEKKRLVWKVEGSSGNE 425
L+E+ ED+++SVM VELKK+F KKI+EVKE +LS NQE+ EMEK+RL+WKVEGS+G E
Sbjct: 916 LFEVGEDSEYSVMAKVELKKLFHNKKIREVKETSLSGNQEKAEMEKRRLIWKVEGSAG-E 974
Query: 424 HVSRGGPVDPQELNVELAPMEIRTFIIYFDD 332
V RG VD ++L VEL PMEIRT +I FDD
Sbjct: 975 EVKRGEAVDAEKLVVELVPMEIRTLLIKFDD 1005
>ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g13980.1, supported by cDNA: gi_20466475 [Arabidopsis
thaliana] gi|20466476|gb|AAM20555.1| alpha-mannosidase
[Arabidopsis thaliana] gi|23198186|gb|AAN15620.1|
alpha-mannosidase [Arabidopsis thaliana]
Length = 1024
Score = 108 bits (271), Expect = 4e-23
Identities = 57/98 (58%), Positives = 74/98 (75%), Gaps = 3/98 (3%)
Frame = -1
Query: 604 LYEIEEDTDFSVMTNVELKKIFPGKKIKEVKEMNLSANQERTEMEKKRLVWKV--EGSSG 431
LYE+EED + S + +VELKK+FPGKKI ++ EM+LSANQER+ MEKKRLVWKV EGS G
Sbjct: 919 LYEVEEDKELSGVASVELKKLFPGKKIGKLTEMSLSANQERSTMEKKRLVWKVEGEGSYG 978
Query: 430 NE-HVSRGGPVDPQELNVELAPMEIRTFIIYFDDVPNH 320
E RG +DP++L +EL PMEIRT +I+ + +H
Sbjct: 979 EEKKAKRGREIDPRKLEMELYPMEIRTVLIHLELPSSH 1016
>dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana]
Length = 1030
Score = 108 bits (271), Expect = 4e-23
Identities = 57/98 (58%), Positives = 74/98 (75%), Gaps = 3/98 (3%)
Frame = -1
Query: 604 LYEIEEDTDFSVMTNVELKKIFPGKKIKEVKEMNLSANQERTEMEKKRLVWKV--EGSSG 431
LYE+EED + S + +VELKK+FPGKKI ++ EM+LSANQER+ MEKKRLVWKV EGS G
Sbjct: 925 LYEVEEDKELSGVASVELKKLFPGKKIGKLTEMSLSANQERSTMEKKRLVWKVEGEGSYG 984
Query: 430 NE-HVSRGGPVDPQELNVELAPMEIRTFIIYFDDVPNH 320
E RG +DP++L +EL PMEIRT +I+ + +H
Sbjct: 985 EEKKAKRGREIDPRKLEMELYPMEIRTVLIHLELPSSH 1022
>ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g66150.1 [Arabidopsis thaliana]
gi|10177130|dbj|BAB10420.1| alpha-mannosidase
[Arabidopsis thaliana]
Length = 1047
Score = 98.6 bits (244), Expect = 5e-20
Identities = 52/90 (57%), Positives = 65/90 (71%), Gaps = 1/90 (1%)
Frame = -1
Query: 604 LYEIEEDTDFSVMTNVELKKIFPGKKIKEVKEMNLSANQERTEMEKKRLVWKVEGSSGN- 428
LYE ED+D+S + VELKK+F GK IKEV EM+LSANQE+ +M K+++ WKVEG +
Sbjct: 947 LYEAGEDSDYSKIAKVELKKLFSGKMIKEVTEMSLSANQEKVKM-KEKMKWKVEGEAEQP 1005
Query: 427 EHVSRGGPVDPQELNVELAPMEIRTFIIYF 338
RGGPVD L VEL PMEIRTF++ F
Sbjct: 1006 SSPLRGGPVDKSTLVVELGPMEIRTFVVQF 1035
>gb|AAL73069.1|AC090873_15 Putative alpha-mannosidase [Oryza sativa]
gi|19919971|gb|AAM08419.1|AC112513_5 Putative
alpha-mannosidase [Oryza sativa]
Length = 438
Score = 86.3 bits (212), Expect = 3e-16
Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Frame = -1
Query: 604 LYEIEEDTDFSVMTNVELKKIFPGKKIKEVKEMNLSANQERTEMEKKRLVWKVEGSSGNE 425
L++ +EDT +SVM VEL+K+F + IK++ E +LSANQ+++EM K+L W+V G S +
Sbjct: 351 LFQAQEDTQYSVMAKVELRKLFGKRIIKDLTETSLSANQKKSEM--KKLNWRVTGESKTD 408
Query: 424 HVS-RGGPVDPQELNVELAPMEIRTFIIYF 338
+GGPVD L VEL PMEIRTF++ F
Sbjct: 409 PAPLKGGPVDSHALVVELGPMEIRTFLLKF 438
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,912,720
Number of Sequences: 1393205
Number of extensions: 9715480
Number of successful extensions: 26077
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 25241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26058
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
