Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006502A_C01 KMC006502A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86438 protein T19E23.7 [imported] - Arabidopsis thaliana g... 51 1e-05
ref|NP_174413.1| unknown protein; protein id: At1g31280.1 [Arabi... 51 1e-05
dbj|BAC43071.1| unknown protein [Arabidopsis thaliana] gi|290289... 51 1e-05
ref|NP_174414.1| hypothetical protein; protein id: At1g31290.1 [... 50 2e-05
ref|NP_034291.1| ecotropic viral integration site 2A [Mus muscul... 35 0.68
>pir||H86438 protein T19E23.7 [imported] - Arabidopsis thaliana
gi|6692120|gb|AAF24585.1|AC007654_1 T19E23.7 [Arabidopsis
thaliana]
Length = 1014
Score = 50.8 bits (120), Expect = 1e-05
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = -3
Query: 579 YYADLAAYRGRLYYEA---KIGVPSPGSNSSSSSSPLASSSFSSIASYSNDASCYKLHPT 409
YYAD+ A+RGR+Y+EA + P S+S++S +SS SS+ D + +KLH
Sbjct: 951 YYADMVAFRGRMYHEASSREKNFKQPRGASTSAAS--LASSLSSLT--IEDKAIFKLHAE 1006
Query: 408 MENVMFFV 385
+ENVMFFV
Sbjct: 1007 LENVMFFV 1014
>ref|NP_174413.1| unknown protein; protein id: At1g31280.1 [Arabidopsis thaliana]
Length = 1013
Score = 50.8 bits (120), Expect = 1e-05
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = -3
Query: 579 YYADLAAYRGRLYYEA---KIGVPSPGSNSSSSSSPLASSSFSSIASYSNDASCYKLHPT 409
YYAD+ A+RGR+Y+EA + P S+S++S +SS SS+ D + +KLH
Sbjct: 950 YYADMVAFRGRMYHEASSREKNFKQPRGASTSAAS--LASSLSSLT--IEDKAIFKLHAE 1005
Query: 408 MENVMFFV 385
+ENVMFFV
Sbjct: 1006 LENVMFFV 1013
>dbj|BAC43071.1| unknown protein [Arabidopsis thaliana] gi|29028940|gb|AAO64849.1|
At1g31280 [Arabidopsis thaliana]
Length = 540
Score = 50.8 bits (120), Expect = 1e-05
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = -3
Query: 579 YYADLAAYRGRLYYEA---KIGVPSPGSNSSSSSSPLASSSFSSIASYSNDASCYKLHPT 409
YYAD+ A+RGR+Y+EA + P S+S++S +SS SS+ D + +KLH
Sbjct: 477 YYADMVAFRGRMYHEASSREKNFKQPRGASTSAAS--LASSLSSLT--IEDKAIFKLHAE 532
Query: 408 MENVMFFV 385
+ENVMFFV
Sbjct: 533 LENVMFFV 540
>ref|NP_174414.1| hypothetical protein; protein id: At1g31290.1 [Arabidopsis thaliana]
gi|6692121|gb|AAF24586.1|AC007654_2 T19E23.8 [Arabidopsis
thaliana]
Length = 1194
Score = 50.1 bits (118), Expect = 2e-05
Identities = 31/65 (47%), Positives = 39/65 (59%), Gaps = 1/65 (1%)
Frame = -3
Query: 576 YADLAAYRGRLYYEAKI-GVPSPGSNSSSSSSPLASSSFSSIASYSNDASCYKLHPTMEN 400
YAD AA RGR+YYEA + S S +SSSS +SS SS+ D +K+H +EN
Sbjct: 1132 YADKAASRGRVYYEASLMKKNSKQSRGASSSSASVASSSSSVT--MEDKEIFKVHAGIEN 1189
Query: 399 VMFFV 385
MFFV
Sbjct: 1190 FMFFV 1194
>ref|NP_034291.1| ecotropic viral integration site 2A [Mus musculus]
gi|110074|pir||A36462 probable transmembrane protein
Evi-2 precursor - mouse (strain BXH-2)
gi|193205|gb|AAA37584.1| ORF gi|23273691|gb|AAH38124.1|
ecotropic viral integration site 2 [Mus musculus]
gi|26336180|dbj|BAC31775.1| unnamed protein product [Mus
musculus] gi|26338051|dbj|BAC32711.1| unnamed protein
product [Mus musculus]
Length = 223
Score = 35.0 bits (79), Expect = 0.68
Identities = 22/80 (27%), Positives = 37/80 (45%)
Frame = -3
Query: 522 VPSPGSNSSSSSSPLASSSFSSIASYSNDASCYKLHPTMENVMFFV*KVCICILQLLLLL 343
VP +++ SS+P A + S A + +K EN +C+ ++ +L L+
Sbjct: 80 VPLASTSTLKSSTPHAFRNSSPTAEIKSQGETFKKEVCEENTSNTAMLICLIVIAVLFLI 139
Query: 342 CIQTFFALGQITLVLMLSSL 283
C TF L + L +SSL
Sbjct: 140 C--TFLFLSTVVLANKVSSL 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,201,278
Number of Sequences: 1393205
Number of extensions: 9791708
Number of successful extensions: 67354
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 38213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57397
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
