Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006478A_C01 KMC006478A_c01
(801 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_688874.1| prophage LambdaSa2, site-specific recombinase, ... 32 8.3
ref|NP_647706.1| CG13807-PA [Drosophila melanogaster] gi|7292217... 32 8.3
gb|ZP_00123518.1| hypothetical protein [Haemophilus somnus 129PT] 32 8.3
>ref|NP_688874.1| prophage LambdaSa2, site-specific recombinase, phage integrase
family [Streptococcus agalactiae 2603V/R]
gi|22534925|gb|AAN00747.1|AE014276_28 prophage
LambdaSa2, site-specific recombinase, phage integrase
family [Streptococcus agalactiae 2603V/R]
Length = 356
Score = 32.3 bits (72), Expect = 8.3
Identities = 26/82 (31%), Positives = 34/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 494 MYKRATTKDSMYNRFHPNIICTA*YHLHLKVKEEN*DVDIQITY*TDLMNSDVNKMGENQ 673
+YKR KD + + N Y LKVK DI Y +N+ GE
Sbjct: 72 VYKRPYVKDKTWETYSKNFKHIKNYFQELKVK------DITPLY----YQKKLNEFGEKY 121
Query: 674 LQNPAVHFHFQV-GAMYVQKRQ 736
Q FH+Q+ GAM V R+
Sbjct: 122 AQETLEKFHYQIKGAMKVAVRE 143
>ref|NP_647706.1| CG13807-PA [Drosophila melanogaster] gi|7292217|gb|AAF47627.1|
CG13807-PA [Drosophila melanogaster]
Length = 170
Score = 32.3 bits (72), Expect = 8.3
Identities = 16/44 (36%), Positives = 22/44 (49%)
Frame = -2
Query: 761 PEPPIIGRIGASEHTLPPPGNGNGLPGFATGSHPFYSRRNSSGR 630
PEPPI+ E+ + G G G G G HP+++R N R
Sbjct: 46 PEPPIV------ENWMGGGGGGGGFQGGGGGGHPYHNRYNGHRR 83
>gb|ZP_00123518.1| hypothetical protein [Haemophilus somnus 129PT]
Length = 338
Score = 32.3 bits (72), Expect = 8.3
Identities = 23/68 (33%), Positives = 34/68 (49%), Gaps = 2/68 (2%)
Frame = -2
Query: 761 PEPPIIGRIGASEH--TLPPPGNGNGLPGFATGSHPFYSRRNSSGRFNR*FECPHLSFPP 588
P P I IGA + L + NG P + G HP + +R + R N+ F P++ FP
Sbjct: 6 PSPTPITVIGAGAYGTALAIAFSRNGYPTYLWGHHPQHCQRLRNERKNQAF-LPNIHFPD 64
Query: 587 LLLDEDDI 564
L ED++
Sbjct: 65 SLYVEDNL 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 711,888,949
Number of Sequences: 1393205
Number of extensions: 16270019
Number of successful extensions: 38031
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37992
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
