Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006468A_C01 KMC006468A_c01
(672 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180196.1| unknown protein; protein id: At2g26280.1 [Arabi... 124 9e-28
gb|AAN65434.1| Unknown protein [Oryza sativa (japonica cultivar-... 64 2e-09
gb|AAF02930.1|AF092366_1 NADH dehydrogenase subunit II [Cynolebi... 34 1.6
dbj|BAA92651.1| KIAA1413 protein [Homo sapiens] 33 2.7
ref|NP_716335.1| MATE efflux family protein [Shewanella oneidens... 33 2.7
>ref|NP_180196.1| unknown protein; protein id: At2g26280.1 [Arabidopsis thaliana]
gi|25407833|pir||E84658 hypothetical protein At2g26280
[imported] - Arabidopsis thaliana
gi|3075391|gb|AAC14523.1| unknown protein [Arabidopsis
thaliana]
Length = 567
Score = 124 bits (312), Expect = 9e-28
Identities = 64/100 (64%), Positives = 79/100 (79%), Gaps = 1/100 (1%)
Frame = -2
Query: 596 RNPVAPEMRXNGRGHERIIDLHGLHASEAIHLLKHELSVLKSTAMAAGQRLQAYICVDTD 417
RNPV + N RG+ER+IDLHGLH SEA+ +LKHELSVL+STA A +RLQ YICV T
Sbjct: 470 RNPVG---QGNSRGNERMIDLHGLHVSEALQVLKHELSVLRSTARATQERLQIYICVGTG 526
Query: 416 HHTWASHTPAKLPLIVQRFLL-EEGLEFTVPQSGLLCVVI 300
HHT S TPA+LP+ VQR+LL EEGL+++ PQ+GLL V+I
Sbjct: 527 HHTRGSRTPARLPVAVQRYLLEEEGLDYSEPQAGLLRVII 566
>gb|AAN65434.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
gi|27436759|gb|AAO13478.1| Unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 581
Score = 63.5 bits (153), Expect = 2e-09
Identities = 37/94 (39%), Positives = 53/94 (56%)
Frame = -2
Query: 581 PEMRXNGRGHERIIDLHGLHASEAIHLLKHELSVLKSTAMAAGQRLQAYICVDTDHHTWA 402
PE + + IDL GLH SEAIH L +EL+ + A + G+RLQ I T
Sbjct: 494 PEFQGLVQEQNTPIDLCGLHVSEAIHALNYELNNRRKIARSTGRRLQVIIISST------ 547
Query: 401 SHTPAKLPLIVQRFLLEEGLEFTVPQSGLLCVVI 300
TPA+L V+++LLE G+++T Q GL V++
Sbjct: 548 -RTPARLTAAVEQYLLEHGIQYTQAQPGLFRVLL 580
>gb|AAF02930.1|AF092366_1 NADH dehydrogenase subunit II [Cynolebias myersi]
Length = 348
Score = 34.3 bits (77), Expect = 1.6
Identities = 21/66 (31%), Positives = 39/66 (58%)
Frame = +3
Query: 39 QINRRKMLPDNG**SPIRLXVYLMLMIQFCYNPSFFLFFLFLVQAWTLPLFLIYRYTRTT 218
Q RKML S I +++L++QF + +F +F ++++ T PLFL +++ +TT
Sbjct: 171 QTQLRKMLAY----SSIAHLGWIVLVMQFLPSLAFLVFLMYVIM--TAPLFLTFQFMKTT 224
Query: 219 TMSLCS 236
T++ S
Sbjct: 225 TINSLS 230
>dbj|BAA92651.1| KIAA1413 protein [Homo sapiens]
Length = 1399
Score = 33.5 bits (75), Expect = 2.7
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = -2
Query: 551 ERIIDLHGLHASEAIHLLKHELSVL-KSTAMAAGQRLQAYICVDTDHHTWASHTPAKLPL 375
+ ++DLHGLH EA L+H + VL K T + Y+ V T + A++
Sbjct: 1317 QNVLDLHGLHVDEA---LEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKP 1373
Query: 374 IVQRFLLEEGLEFTVPQSGLLCVVI 300
V ++L+ F+ + G L V++
Sbjct: 1374 AVIKYLISHSFRFSEIKPGCLKVML 1398
>ref|NP_716335.1| MATE efflux family protein [Shewanella oneidensis MR-1]
gi|24346226|gb|AAN53780.1|AE015516_2 MATE efflux family
protein [Shewanella oneidensis MR-1]
Length = 452
Score = 33.5 bits (75), Expect = 2.7
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
Frame = +1
Query: 442 CKRCPAAMAVLFSTLNSCFSR*MASLACNPCRSIILSCPLPL--XRISGATGFL 597
C P + ++F+T + + R M+SL N CR ++L PL I G G L
Sbjct: 366 CAYGPLGIVIIFATALNAYHRPMSSLVINLCRLVLLMLPLAALGSYIDGVKGLL 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,554,939
Number of Sequences: 1393205
Number of extensions: 11578484
Number of successful extensions: 36527
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 33101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36238
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
