Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006431A_C01 KMC006431A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192327.1| putative vesicle transfer ATPase; protein id: A... 69 3e-11
gb|EAA20778.1| Drosophila melanogaster BcDNA.GH06032 [Plasmodium... 32 2.9
ref|NP_712248.1| ATPases of the AAA+ class [Leptospira interroga... 31 6.5
gb|EAA33422.1| hypothetical protein [Neurospora crassa] 31 8.5
ref|NP_703395.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.5
>ref|NP_192327.1| putative vesicle transfer ATPase; protein id: At4g04180.1
[Arabidopsis thaliana] gi|7487461|pir||T01821
hypothetical protein T27D20.13 - Arabidopsis thaliana
gi|3377851|gb|AAC28233.1| contains similarity to ATPases
associated with various cellular activities (Pfam:
AAA.hmm, score: 155.05) [Arabidopsis thaliana]
gi|7267174|emb|CAB77886.1| putative vesicle transfer
ATPase [Arabidopsis thaliana]
Length = 536
Score = 68.9 bits (167), Expect = 3e-11
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 10/89 (11%)
Frame = -3
Query: 488 ELNDLASITEDMSGRDIRDVCLQAERSWASKIIR----GQISK----DGEQAK--LPPLE 339
EL LA TE MSGRDIRDVC AER+WASKII GQ+ + GE+ K LPP++
Sbjct: 441 ELVQLAQATEAMSGRDIRDVCQGAERTWASKIINLYIVGQLIRRAKAGGEEQKITLPPIQ 500
Query: 338 EYIACATNRRESLLSAAADRKPPSSSRQR 252
EY+ A RR+SL S ++ ++R +
Sbjct: 501 EYLESAEARRKSLRSVTEQKEQKFAARSK 529
>gb|EAA20778.1| Drosophila melanogaster BcDNA.GH06032 [Plasmodium yoelii yoelii]
Length = 1682
Score = 32.3 bits (72), Expect = 2.9
Identities = 18/61 (29%), Positives = 30/61 (48%)
Frame = -2
Query: 186 FFLLLNLPCNKIKRRIHSLNLFFCKIKFLR*KF*LIFLS*LVINLYIKYSVVTLVRYIDI 7
FFL LN I + +N FF + F + +FLS +++++ Y +RYI +
Sbjct: 1618 FFLFLN-----IMNIVPYINYFFSLVPFPTYRLKFLFLSLMILDILAPYMFCNFIRYIRL 1672
Query: 6 Y 4
Y
Sbjct: 1673 Y 1673
>ref|NP_712248.1| ATPases of the AAA+ class [Leptospira interrogans serovar lai str.
56601] gi|24195770|gb|AAN49266.1|AE011379_1 ATPases of
the AAA+ class [Leptospira interrogans serovar lai str.
56601]
Length = 428
Score = 31.2 bits (69), Expect = 6.5
Identities = 18/41 (43%), Positives = 22/41 (52%)
Frame = -3
Query: 452 SGRDIRDVCLQAERSWASKIIRGQISKDGEQAKLPPLEEYI 330
SGR IRD C ER WAS +I + G + PP E Y+
Sbjct: 385 SGRTIRDFCDLIERKWASYLI-----EKGLKPVPPPYELYL 420
>gb|EAA33422.1| hypothetical protein [Neurospora crassa]
Length = 414
Score = 30.8 bits (68), Expect = 8.5
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -3
Query: 488 ELNDLASITEDMSGRDIRDVCLQAERSWASKIIRGQISKDGEQAKLPPLEEYIACATN-- 315
+L +A +TE MSG ++++ C A + IR Q + KL P TN
Sbjct: 314 DLEYIAMVTEGMSGSELKEACRDAAMVPMREAIRNQKAAGKSIKKLDP-NTVRGLRTNDF 372
Query: 314 --RRESLLSAAADRKPPS 267
R+ S AAD +P S
Sbjct: 373 FGRKGGAPSLAADSRPSS 390
>ref|NP_703395.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504535|emb|CAD51415.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2961
Score = 30.8 bits (68), Expect = 8.5
Identities = 20/61 (32%), Positives = 35/61 (56%), Gaps = 3/61 (4%)
Frame = +3
Query: 54 NL*RVKKEK*AKISILKTLFYKRKGLMNGFYVLFCYTEDLVKGKKIYV-NL--STINKVS 224
N+ + +++ S K ++YK KG+MN ++ F D +K +KI++ NL +NKV
Sbjct: 1777 NITKNNRQEKLLFSFCKYIYYKWKGIMNYLFMYF----DKIKNRKIFLENLIDHCLNKVD 1832
Query: 225 E 227
E
Sbjct: 1833 E 1833
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,182,715
Number of Sequences: 1393205
Number of extensions: 7459106
Number of successful extensions: 19007
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19005
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
