Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006419A_C01 KMC006419A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P27314|RRPL_SEOU8 RNA-DIRECTED RNA POLYMERASE (L PROTEIN) gi|... 32 4.1
gb|AAO52153.1| similar to Plasmodium falciparum (isolate 3D7). H... 32 5.3
ref|NP_650197.1| CG5245-PA [Drosophila melanogaster] gi|7299629|... 31 9.1
>sp|P27314|RRPL_SEOU8 RNA-DIRECTED RNA POLYMERASE (L PROTEIN) gi|94111|pir||S16449 genome
polyprotein - Seoul virus (strain 80-39)
gi|60441|emb|CAA39847.1| L protein [Hantavirus]
Length = 2151
Score = 32.0 bits (71), Expect = 4.1
Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 17 LFTLFNLKLDTSSVLNRSTFFQMYFFLPLVRKVIDHGGPNCACEWSLMLHIMTIKQNRGT 196
L +FNLK + SS+ + F Y + L+R ID G N A W + + +G+
Sbjct: 207 LEAMFNLKFNISSLKTQPYFIPEYKGIDLIRPDID-GLVNYAQSWMSKTQEFSFFEVKGS 265
Query: 197 S--DCFSVRGQG 226
+ DCF+ QG
Sbjct: 266 AVFDCFNENEQG 277
>gb|AAO52153.1| similar to Plasmodium falciparum (isolate 3D7). Hypothetical
protein [Dictyostelium discoideum]
Length = 1909
Score = 31.6 bits (70), Expect = 5.3
Identities = 18/38 (47%), Positives = 24/38 (62%), Gaps = 3/38 (7%)
Frame = +1
Query: 316 PQKRSTLGSTRLQLPY---IQLHQELNTFSDSSHNNSL 420
PQ +S+L S+ LP +Q Q +N+FS SS NNSL
Sbjct: 615 PQLQSSLNSSNGSLPNFTPLQKSQSINSFSGSSSNNSL 652
>ref|NP_650197.1| CG5245-PA [Drosophila melanogaster] gi|7299629|gb|AAF54813.1|
CG5245-PA [Drosophila melanogaster]
Length = 501
Score = 30.8 bits (68), Expect = 9.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 233 ILIPVLEH*NSQKFPCSA*LSLYVTSNSIHMHNLDHHGQ 117
+L+ + EH +F C Y TS+++HMH H G+
Sbjct: 403 LLVHLQEHTGKNQFECPHCSKSYTTSSTLHMHLRTHTGE 441
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,124,359
Number of Sequences: 1393205
Number of extensions: 7158700
Number of successful extensions: 14429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14426
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
