Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006309A_C01 KMC006309A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO51519.1| similar to GNS1/SUR4 family protein [Schizosaccha... 32 3.8
ref|NP_764901.1| hemA concentration negative effector [Staphyloc... 32 5.0
gb|AAD39492.1|AF145272_1 pulvinus inward-rectifying channel SPIC... 32 6.5
ref|NP_632404.1| Peptidyl-prolyl cis-trans isomerase [Methanosar... 32 6.5
gb|EAA39093.1| GLP_305_9469_12498 [Giardia lamblia ATCC 50803] 31 8.5
>gb|AAO51519.1| similar to GNS1/SUR4 family protein [Schizosaccharomyces pombe]
[Dictyostelium discoideum]
Length = 296
Score = 32.3 bits (72), Expect = 3.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 397 YHFCSCVMMICYFTYLWWKLKDKYFFGFTFVH-FIYSSHF 281
YH C V + YF Y W L+ F TFVH F+Y +F
Sbjct: 165 YHHCIVVWLCWYFMYSGWNLQLWVVFLNTFVHVFMYYFYF 204
>ref|NP_764901.1| hemA concentration negative effector [Staphylococcus epidermidis
ATCC 12228] gi|27315810|gb|AAO04945.1|AE016748_179 hemA
concentration negative effector [Staphylococcus
epidermidis ATCC 12228]
Length = 270
Score = 32.0 bits (71), Expect = 5.0
Identities = 35/132 (26%), Positives = 64/132 (47%), Gaps = 2/132 (1%)
Frame = -1
Query: 391 FCSCVMMICYFTYLWWKLKDKYFFGFTFVHFIYSSHFCSVLIFAEVALRLATLEATYGHL 212
F + ++ I + L K D+ +F V + + F S L+ A + L L+T+ L
Sbjct: 150 FVNSLLYIIQYRNLKEKNFDQNYFRIGSVATLETIVFYSTLV-AWIILILSTI------L 202
Query: 211 GLMWDL--ISQQLMSGPLLLSILFSIS*V*T*T*FIFMFIRIILLREIIERNILQLSAFL 38
G W + + +Q+ P ++FS + T +++FIRI + I +RN++ + L
Sbjct: 203 GAQWGIFAVGKQIFIDP---KVIFST--IITLLYGVYIFIRI--KKWISQRNLIYFNIIL 255
Query: 37 LCLILMTLVTLT 2
CL ++ L LT
Sbjct: 256 FCLCMINLFFLT 267
>gb|AAD39492.1|AF145272_1 pulvinus inward-rectifying channel SPICK2 [Samanea saman]
Length = 810
Score = 31.6 bits (70), Expect = 6.5
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -3
Query: 263 C*SSIEIGHLGGNLWAFGSDVGFDFSTVDEWPLVAFNTIFYFVGIDIDIVHFYVYKNNS 87
C S+ + +G + W + ++GF S+ + N I F G+DI + F Y ++S
Sbjct: 79 CWESLMVVLVGYSAWVYPFEIGFLMSSPTHKLYIVDNIIDIFFGVDIVLTFFLAYIDSS 137
>ref|NP_632404.1| Peptidyl-prolyl cis-trans isomerase [Methanosarcina mazei Goe1]
gi|20904747|gb|AAM30076.1| Peptidyl-prolyl cis-trans
isomerase [Methanosarcina mazei Goe1]
Length = 160
Score = 31.6 bits (70), Expect = 6.5
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 4/62 (6%)
Frame = +2
Query: 254 YFSKNQNRAKV*GIDE----VNEGETKKILIL*FPPQISEITDHHNARTEVIPWLSLELQ 421
+F + R + GIDE + EGE K + I P +H + + IP L LEL+
Sbjct: 50 FFFRTDTRQVIKGIDEGVLGMREGEEKTLKI----PPAEAYGEHKDYLVQKIPLLRLELK 105
Query: 422 EP 427
EP
Sbjct: 106 EP 107
>gb|EAA39093.1| GLP_305_9469_12498 [Giardia lamblia ATCC 50803]
Length = 1009
Score = 31.2 bits (69), Expect = 8.5
Identities = 22/77 (28%), Positives = 38/77 (48%), Gaps = 5/77 (6%)
Frame = -1
Query: 220 GHLGLMWDLISQQLMSGPLLLSILFSIS*V*T*T*FIFMFIRIILLREII-----ERNIL 56
G L + ++ ++L+ GP L+ ++ F FI ++ L + +R IL
Sbjct: 4 GQLKMKRCIVRRELLPGPFLIPVI------------AFPFIILLSLLKFFGLNTSQRKIL 51
Query: 55 QLSAFLLCLILMTLVTL 5
LSA+ L +ILM+ V L
Sbjct: 52 PLSAYFLLMILMSFVEL 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,456,034
Number of Sequences: 1393205
Number of extensions: 8515360
Number of successful extensions: 20445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20431
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
