Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006306A_C01 KMC006306A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_653811.1| EAL, Domain of unknown function 2 [Bacillus ant... 34 1.5
>ref|NP_653811.1| EAL, Domain of unknown function 2 [Bacillus anthracis A2012]
Length = 735
Score = 33.9 bits (76), Expect = 1.5
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Frame = -2
Query: 493 MFS*YRCSNYSLSRVSF-----------YLSVYRINVLL*PSS--CSMIHWTLILTMHAG 353
+ S YR YS SR+S Y+ ++++N + PSS +IH IL +
Sbjct: 23 VISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASILLIGLS 82
Query: 352 RWLYVIKKKKQHEKK 308
LY++ K QHE K
Sbjct: 83 SILYILDKPIQHETK 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,559,688
Number of Sequences: 1393205
Number of extensions: 8129923
Number of successful extensions: 14240
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14239
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
