Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006304A_C01 KMC006304A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196717.1| putative protein; protein id: At5g11560.1 [Arab... 166 1e-40
ref|XP_082354.1| CG2943 [Drosophila melanogaster] gi|16184846|gb... 84 7e-16
ref|NP_649747.1| CG2943-PA [Drosophila melanogaster] gi|7298957|... 84 7e-16
gb|EAA08923.1| agCP7856 [Anopheles gambiae str. PEST] 79 4e-14
pir||T32814 hypothetical protein H17B01.4 - Caenorhabditis elegans 74 9e-13
>ref|NP_196717.1| putative protein; protein id: At5g11560.1 [Arabidopsis thaliana]
gi|11357473|pir||T48515 hypothetical protein F15N18.150 -
Arabidopsis thaliana gi|7573413|emb|CAB87716.1| putative
protein [Arabidopsis thaliana]
Length = 955
Score = 166 bits (420), Expect = 1e-40
Identities = 79/98 (80%), Positives = 93/98 (94%)
Frame = -2
Query: 499 IPLTDSLPIIPQSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDS 320
IPLTD+LPIIPQ+Y+THS KVEGLRGIVT P+KLEST+ VFAYGVDLF+T++APS+TYDS
Sbjct: 858 IPLTDTLPIIPQAYVTHSHKVEGLRGIVTAPSKLESTTHVFAYGVDLFYTRLAPSKTYDS 917
Query: 319 LTEDFSYALLLLTIVALVAAIFATWVLSERKDLEEKWR 206
LT+DFSYALLL+TIVALVAAI+ TWVLSE+K+L EKWR
Sbjct: 918 LTDDFSYALLLITIVALVAAIYITWVLSEKKELSEKWR 955
>ref|XP_082354.1| CG2943 [Drosophila melanogaster] gi|16184846|gb|AAL13840.1|
LD30573p [Drosophila melanogaster]
Length = 521
Score = 84.3 bits (207), Expect = 7e-16
Identities = 43/98 (43%), Positives = 62/98 (62%)
Frame = -2
Query: 499 IPLTDSLPIIPQSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDS 320
IP LP+ +S+I ++ V LR I T P+ LEST LV A G+DLF T++APS+T+D
Sbjct: 424 IPYIPELPLPTESHINYNQTVARLRNIYTAPSGLESTCLVVATGLDLFVTRVAPSKTFDL 483
Query: 319 LTEDFSYALLLLTIVALVAAIFATWVLSERKDLEEKWR 206
L EDF Y L+ + +VAL + L+ RK L++ W+
Sbjct: 484 LKEDFDYILISIVLVALTSGSLIVKHLASRKLLKQAWK 521
>ref|NP_649747.1| CG2943-PA [Drosophila melanogaster] gi|7298957|gb|AAF54161.1|
CG2943-PA [Drosophila melanogaster]
Length = 915
Score = 84.3 bits (207), Expect = 7e-16
Identities = 43/98 (43%), Positives = 62/98 (62%)
Frame = -2
Query: 499 IPLTDSLPIIPQSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDS 320
IP LP+ +S+I ++ V LR I T P+ LEST LV A G+DLF T++APS+T+D
Sbjct: 818 IPYIPELPLPTESHINYNQTVARLRNIYTAPSGLESTCLVVATGLDLFVTRVAPSKTFDL 877
Query: 319 LTEDFSYALLLLTIVALVAAIFATWVLSERKDLEEKWR 206
L EDF Y L+ + +VAL + L+ RK L++ W+
Sbjct: 878 LKEDFDYILISIVLVALTSGSLIVKHLASRKLLKQAWK 915
>gb|EAA08923.1| agCP7856 [Anopheles gambiae str. PEST]
Length = 943
Score = 78.6 bits (192), Expect = 4e-14
Identities = 37/98 (37%), Positives = 60/98 (60%)
Frame = -2
Query: 499 IPLTDSLPIIPQSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDS 320
+P LP+ + I ++ V +RGI T P+ LEST LV +G+DLF T+++PS+T+D
Sbjct: 846 VPYMPELPLPHEILINYNQTVTHIRGIHTAPSGLESTCLVLVHGLDLFVTRVSPSKTFDL 905
Query: 319 LTEDFSYALLLLTIVALVAAIFATWVLSERKDLEEKWR 206
L EDF Y L+ + +V L F L+ +K +++ W+
Sbjct: 906 LKEDFDYFLITVVLVVLTTTSFVVKQLASKKLVKQAWK 943
>pir||T32814 hypothetical protein H17B01.4 - Caenorhabditis elegans
Length = 997
Score = 73.9 bits (180), Expect = 9e-13
Identities = 36/91 (39%), Positives = 54/91 (58%)
Frame = -2
Query: 481 LPIIPQSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFS 302
+ + + I ++ V +RGI T P+ LESTSLV AYG DLFFT++ PS T+D L +DF
Sbjct: 906 IAVATEEMINYNQTVHRVRGIKTSPSGLESTSLVLAYGTDLFFTRLVPSGTFDILKDDFD 965
Query: 301 YALLLLTIVALVAAIFATWVLSERKDLEEKW 209
+ L+ L + LV + + L+ L +W
Sbjct: 966 HVLISLVLTGLVVGSYVSKRLARSNALASQW 996
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,521,809
Number of Sequences: 1393205
Number of extensions: 8219975
Number of successful extensions: 17015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16952
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
