Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006292A_C01 KMC006292A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB07943.1| putative eukaryotic translation initiation facto... 32 5.6
pir||I58157 periaxin - rat 31 7.4
ref|NP_076466.2| periaxin [Rattus norvegicus] gi|20178310|sp|Q63... 31 7.4
gb|ZP_00000934.1| hypothetical protein [Ferroplasma acidarmanus] 31 7.4
ref|ZP_00116832.1| hypothetical protein [Cytophaga hutchinsonii] 31 9.6
>dbj|BAB07943.1| putative eukaryotic translation initiation factor 3 large subunit
[Oryza sativa (japonica cultivar-group)]
Length = 984
Score = 31.6 bits (70), Expect = 5.6
Identities = 18/47 (38%), Positives = 32/47 (67%), Gaps = 2/47 (4%)
Frame = +2
Query: 149 ATIFHYNRRQYAPKSLKIGREERYQKKI--KDKEEEKRIMNILAKSA 283
A + + ++R A KS+ R+E +++I K+KEEEK+ +++L KSA
Sbjct: 555 AVVENEHKRLLARKSIIEKRKEDLERQILEKEKEEEKKRLSVLKKSA 601
>pir||I58157 periaxin - rat
Length = 1389
Score = 31.2 bits (69), Expect = 7.4
Identities = 15/55 (27%), Positives = 27/55 (48%)
Frame = +1
Query: 274 KICSTMIPTLSLQSIPEIYISGAWVNDRENPMNPKMGMPVMTVRVASIMVLLDIH 438
K+ +P + L IPE+ + + D + P P+M +P M + M + D+H
Sbjct: 499 KVPEMKVPEMKLPKIPEMAVPDVHLPDIQLPKVPEMKLPDMKLPKVPEMAVPDVH 553
>ref|NP_076466.2| periaxin [Rattus norvegicus] gi|20178310|sp|Q63425|PRAX_RAT
Periaxin gi|18642399|emb|CAA82757.2| periaxin [Rattus
norvegicus]
Length = 1383
Score = 31.2 bits (69), Expect = 7.4
Identities = 15/55 (27%), Positives = 27/55 (48%)
Frame = +1
Query: 274 KICSTMIPTLSLQSIPEIYISGAWVNDRENPMNPKMGMPVMTVRVASIMVLLDIH 438
K+ +P + L IPE+ + + D + P P+M +P M + M + D+H
Sbjct: 499 KVPEMKVPEMKLPKIPEMAVPDVHLPDIQLPKVPEMKLPDMKLPKVPEMAVPDVH 553
>gb|ZP_00000934.1| hypothetical protein [Ferroplasma acidarmanus]
Length = 497
Score = 31.2 bits (69), Expect = 7.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +1
Query: 322 EIYISGAWVNDRENP----MNPKMGMPVMTVRVASIMVLLDIHHSSRGIRTIFKNNFW 483
+++I G WV EN +NP G+PV +V+ AS D+ + R F + W
Sbjct: 5 KMFIGGEWVESSENQVLKVLNPSTGLPVASVQSAS---RDDVGKAIDAARNSFDSGIW 59
>ref|ZP_00116832.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 2772
Score = 30.8 bits (68), Expect = 9.6
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 76 SFKPREKISICIISSLNVYEK---NTIGHYFPLQSPPICPKVSKN 201
SFK SI I S+L Y+ T +Y + S +CPKVS N
Sbjct: 1985 SFKTVAGTSILIGSNLKTYQAPALTTTSYYIRIDSAGVCPKVSTN 2029
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,462,966
Number of Sequences: 1393205
Number of extensions: 9866683
Number of successful extensions: 27679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27629
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
