Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006291A_C01 KMC006291A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_029426.1| expressed protein; protein id: At2g28390.1, sup... 233 1e-60
dbj|BAB63834.1| P0459B04.18 [Oryza sativa (japonica cultivar-gro... 179 1e-45
gb|EAA14084.1| agCP8648 [Anopheles gambiae str. PEST] 78 1e-13
pir||T30808 hypothetical protein Sand - Fugu rubripes gi|3928166... 74 1e-12
gb|AAH48852.1| RIKEN cDNA 2810468K17 gene [Mus musculus] 72 5e-12
>ref|NP_029426.1| expressed protein; protein id: At2g28390.1, supported by cDNA:
gi_15983790 [Arabidopsis thaliana]
gi|15983791|gb|AAL10492.1| At2g28390/T1B3.9 [Arabidopsis
thaliana] gi|20197735|gb|AAD20687.2| expressed protein
[Arabidopsis thaliana] gi|22137018|gb|AAM91354.1|
At2g28390/T1B3.9 [Arabidopsis thaliana]
gi|26451129|dbj|BAC42668.1| unknown protein [Arabidopsis
thaliana]
Length = 607
Score = 233 bits (595), Expect = 1e-60
Identities = 115/166 (69%), Positives = 132/166 (79%)
Frame = -2
Query: 626 VQTSLLEGGMRVEDLPPLPRSGSSSHLGQHRLQSDSPEILRESNSGIGGAAGLWHFIYRS 447
VQ S+ EGGMRVED+P + R SS Q + S P+I + G GG GLWHF+YRS
Sbjct: 448 VQRSIAEGGMRVEDVP-IDRRRRSSTTNQEQ-DSPGPDI----SVGTGGPFGLWHFMYRS 501
Query: 446 IYLDQYVSSEFSPPINTPQQQKRLYRAYQKLFVSMHDKGIGPHKTQFRRDENYVLLCWVT 267
IYLDQY+SSEFSPP+ + +QQK LYRAYQKL+ SMH KG+GPHKTQ+RRDENY LLCWVT
Sbjct: 502 IYLDQYISSEFSPPVTSHRQQKSLYRAYQKLYASMHVKGLGPHKTQYRRDENYTLLCWVT 561
Query: 266 QDFELYAAFDPLADKALAIKTCNRVCQWVKDVENEIFLLGVSPFSW 129
DFELYAAFDPLADKA+AIK CN+VCQ VKDVENE+FL G SPFSW
Sbjct: 562 PDFELYAAFDPLADKAMAIKICNQVCQRVKDVENEVFLQGASPFSW 607
>dbj|BAB63834.1| P0459B04.18 [Oryza sativa (japonica cultivar-group)]
Length = 463
Score = 179 bits (454), Expect(2) = 1e-45
Identities = 93/144 (64%), Positives = 105/144 (72%)
Frame = -2
Query: 629 EVQTSLLEGGMRVEDLPPLPRSGSSSHLGQHRLQSDSPEILRESNSGIGGAAGLWHFIYR 450
EVQ SL E +R+EDLP P S S S Q D L S IGG AGLWHFIY+
Sbjct: 202 EVQRSLRESALRIEDLPADPSSQSVSPPPQ--FSQDLHFQLLSSEMAIGGPAGLWHFIYK 259
Query: 449 SIYLDQYVSSEFSPPINTPQQQKRLYRAYQKLFVSMHDKGIGPHKTQFRRDENYVLLCWV 270
SIYLDQYVSSEF I+ P+QQKRLY+AYQKL+ SMHDK GPHKTQFRRDE+YVL CW+
Sbjct: 260 SIYLDQYVSSEFPLIISNPKQQKRLYKAYQKLYASMHDKATGPHKTQFRRDEDYVLFCWI 319
Query: 269 TQDFELYAAFDPLADKALAIKTCN 198
TQDFELYAAF+PLADK + TC+
Sbjct: 320 TQDFELYAAFNPLADK---VCTCH 340
Score = 26.2 bits (56), Expect(2) = 1e-45
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 214 Q*RLATGCVNG*KMWKMKYFC*ELAPFHGDL 122
Q R A NG WK K+ E APF GD+
Sbjct: 347 QSRYAIEYANGSGTWKTKFSYTEKAPFPGDI 377
>gb|EAA14084.1| agCP8648 [Anopheles gambiae str. PEST]
Length = 511
Score = 77.8 bits (190), Expect = 1e-13
Identities = 41/116 (35%), Positives = 64/116 (54%)
Frame = -2
Query: 482 GAAGLWHFIYRSIYLDQYVSSEFSPPINTPQQQKRLYRAYQKLFVSMHDKGIGPHKTQFR 303
G + HF+Y+S Q + SE + P ++ +Q KRL Y +L +H+ G P K ++
Sbjct: 397 GIPEIRHFLYKSKSNAQLLCSELTVPYSSGEQFKRLEGMYFRLHHRIHNSG-RPVKLIYQ 455
Query: 302 RDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNRVCQWVKDVENEIFLLGVSPF 135
E VLL WVTQ +EL+ F+P +K I N++ +W+K EN +F+L F
Sbjct: 456 MKEKEVLLAWVTQAYELFVTFEPTVEKNEVISLVNKLLKWIKKEENSLFILSAPTF 511
>pir||T30808 hypothetical protein Sand - Fugu rubripes
gi|3928166|emb|CAA09085.1| Sand [Takifugu rubripes]
Length = 520
Score = 74.3 bits (181), Expect = 1e-12
Identities = 40/118 (33%), Positives = 63/118 (52%)
Frame = -2
Query: 482 GAAGLWHFIYRSIYLDQYVSSEFSPPINTPQQQKRLYRAYQKLFVSMHDKGIGPHKTQFR 303
G L HF+Y+S Y S EF + ++Q+RL YQ L +H + P + +R
Sbjct: 406 GIPELRHFLYKSKSSGLYTSPEFPELYQSDEEQERLMGLYQDLHSHLHHP-VRPLRFFYR 464
Query: 302 RDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNRVCQWVKDVENEIFLLGVSPFSW 129
LL WVT F+LY F PL KA+A+ N++ +W++ E+ +F+L SP ++
Sbjct: 465 CTNKENLLAWVTNGFQLYLCFSPLGTKAMAVSAVNKLLKWIRKEEDRLFIL--SPLTY 520
>gb|AAH48852.1| RIKEN cDNA 2810468K17 gene [Mus musculus]
Length = 556
Score = 72.4 bits (176), Expect = 5e-12
Identities = 38/111 (34%), Positives = 59/111 (52%)
Frame = -2
Query: 482 GAAGLWHFIYRSIYLDQYVSSEFSPPINTPQQQKRLYRAYQKLFVSMHDKGIGPHKTQFR 303
G L HF+Y+S + S E P ++ ++Q+RL YQ L H+ P KT +
Sbjct: 442 GIPDLRHFLYKSKSSGLFTSPEIEAPYSSEEEQERLLGLYQYLHSRAHNAS-RPLKTIYY 500
Query: 302 RDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNRVCQWVKDVENEIFLL 150
N LL WVT FELY + PL KA A+ +++ +W++ E+ +F+L
Sbjct: 501 TGPNENLLAWVTGAFELYMCYSPLGTKASAVSAIHKLMRWIRKEEDRLFIL 551
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,967,906
Number of Sequences: 1393205
Number of extensions: 11574083
Number of successful extensions: 30670
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 29903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30647
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
