Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006231A_C01 KMC006231A_c01
(795 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL99224.1| ubiquitin-conjugating enzyme E2 [Gossypium thurbe... 308 5e-83
sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa (Ubi... 308 6e-83
gb|AAL99223.1| ubiquitin-conjugating enzyme E2 [Gossypium arboreum] 308 8e-83
gb|AAN03469.1| ubiquitin-conjugation enzyme [Glycine max] 307 1e-82
gb|AAA64427.1| ubiquitin conjugating enzyme 307 1e-82
>gb|AAL99224.1| ubiquitin-conjugating enzyme E2 [Gossypium thurberi]
gi|28569271|gb|AAL99225.1| ubiquitin-conjugating enzyme
E2 [Gossypium raimondii]
Length = 148
Score = 308 bits (790), Expect = 5e-83
Identities = 146/148 (98%), Positives = 147/148 (98%)
Frame = -2
Query: 680 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDY 501
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYAGGVFLVSIHFPPDY
Sbjct: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVSIHFPPDY 60
Query: 500 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 321
PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 320 PEIAHMYKTDRAKYEATARSWTQKYAMG 237
PEIAHMYKTDRAKYEATAR WTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARGWTQKYAMG 148
>sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) gi|388207|gb|AAA34125.1|
ubiquitin carrier protein
Length = 148
Score = 308 bits (789), Expect = 6e-83
Identities = 146/148 (98%), Positives = 146/148 (98%)
Frame = -2
Query: 680 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDY 501
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPYAGGVFLVSIHFPPDY
Sbjct: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDY 60
Query: 500 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 321
PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 320 PEIAHMYKTDRAKYEATARSWTQKYAMG 237
PEIAHMYKTDRAKYE TARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYETTARSWTQKYAMG 148
>gb|AAL99223.1| ubiquitin-conjugating enzyme E2 [Gossypium arboreum]
Length = 148
Score = 308 bits (788), Expect = 8e-83
Identities = 145/148 (97%), Positives = 147/148 (98%)
Frame = -2
Query: 680 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDY 501
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQAT+MGP+DSPYAGGVFLVSIHFPPDY
Sbjct: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATLMGPSDSPYAGGVFLVSIHFPPDY 60
Query: 500 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 321
PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 320 PEIAHMYKTDRAKYEATARSWTQKYAMG 237
PEIAHMYKTDRAKYEATAR WTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARGWTQKYAMG 148
>gb|AAN03469.1| ubiquitin-conjugation enzyme [Glycine max]
Length = 148
Score = 307 bits (787), Expect = 1e-82
Identities = 146/148 (98%), Positives = 147/148 (98%)
Frame = -2
Query: 680 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDY 501
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLV+IHFPPDY
Sbjct: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDY 60
Query: 500 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 321
PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK LLSICSLLTDPNPDDPLV
Sbjct: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKGLLSICSLLTDPNPDDPLV 120
Query: 320 PEIAHMYKTDRAKYEATARSWTQKYAMG 237
PEIAHMYKTDRAKYEATARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARSWTQKYAMG 148
>gb|AAA64427.1| ubiquitin conjugating enzyme
Length = 148
Score = 307 bits (786), Expect = 1e-82
Identities = 145/148 (97%), Positives = 147/148 (98%)
Frame = -2
Query: 680 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDY 501
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATI+GPADSPYAGGVFLV+IHFPPDY
Sbjct: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIVGPADSPYAGGVFLVTIHFPPDY 60
Query: 500 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 321
PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 320 PEIAHMYKTDRAKYEATARSWTQKYAMG 237
PEIAHMYKTDR KYEATARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRTKYEATARSWTQKYAMG 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 736,040,729
Number of Sequences: 1393205
Number of extensions: 17459528
Number of successful extensions: 52888
Number of sequences better than 10.0: 739
Number of HSP's better than 10.0 without gapping: 50015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52440
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40055936206
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
