Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006143A_C01 KMC006143A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA19167.1| putative yir3 protein [Plasmodium yoelii yoelii] 32 3.3
gb|EAA19494.1| putative yir3 protein [Plasmodium yoelii yoelii] 32 4.3
gb|EAA21087.1| putative yir4 protein [Plasmodium yoelii yoelii] 31 7.4
gb|AAH04183.1|AAH04183 Unknown (protein for MGC:2809) [Homo sapi... 31 9.6
gb|EAA17661.1| putative yir3 protein [Plasmodium yoelii yoelii] 31 9.6
>gb|EAA19167.1| putative yir3 protein [Plasmodium yoelii yoelii]
Length = 340
Score = 32.3 bits (72), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (50%)
Frame = -1
Query: 159 CDEALGRIGL*CLWLLGQHLLSRPGFILILKNSFYFEEY 43
CD L +I CL+LL + F ++ KN+ Y EY
Sbjct: 52 CDNNLDKISAGCLYLLNEFFHDSSAFEMVAKNNIYIVEY 90
Score = 30.8 bits (68), Expect = 9.6
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = -1
Query: 426 CDEVLGRIRL*CLWLLGQHLLSRQGFILILKNSFYFEDY 310
CD L +I CL+LL + F ++ KN+ Y +Y
Sbjct: 52 CDNNLDKISAGCLYLLNEFFHDSSAFEMVAKNNIYIVEY 90
>gb|EAA19494.1| putative yir3 protein [Plasmodium yoelii yoelii]
Length = 324
Score = 32.0 bits (71), Expect = 4.3
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = -1
Query: 159 CDEALGRIGL*CLWLLGQHLLSRPGFILILKNSFYFEEY 43
C+ +L +I CL+LL + F L+ K +FY EY
Sbjct: 81 CNSSLDKISAGCLYLLNEFFRDSSTFELVAKENFYIVEY 119
>gb|EAA21087.1| putative yir4 protein [Plasmodium yoelii yoelii]
Length = 300
Score = 31.2 bits (69), Expect = 7.4
Identities = 14/39 (35%), Positives = 19/39 (47%)
Frame = -1
Query: 159 CDEALGRIGL*CLWLLGQHLLSRPGFILILKNSFYFEEY 43
CD +L +I CL+LL + F L+ K Y EY
Sbjct: 42 CDSSLDQISAGCLYLLNEFFKDDSAFELVAKEEIYIVEY 80
>gb|AAH04183.1|AAH04183 Unknown (protein for MGC:2809) [Homo sapiens]
gi|13938197|gb|AAH07219.1|AAH07219 hypothetical protein
FLJ13081 [Homo sapiens]
Length = 640
Score = 30.8 bits (68), Expect = 9.6
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -2
Query: 311 TFDGNFMNSLLPILRTLTGRITHQELHERIQESYLALNHLAKAVTFCREDAV 156
TF +FM+ L P+ L G +TH L + + YL L HL V + R D +
Sbjct: 333 TFVSSFMSELSPVRAELLGFLTHALLGDSLAAEYLIL-HLISTV-YTRRDVL 382
>gb|EAA17661.1| putative yir3 protein [Plasmodium yoelii yoelii]
Length = 276
Score = 30.8 bits (68), Expect = 9.6
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Frame = -1
Query: 228 KNPRKLF-------GFEPFGQSSNVLQRRC---CDEALGRIGL*CLWLLGQHLLSRPGFI 79
KN R+ F G+ F +++ Q+ C C+ L +I CL+LL + F
Sbjct: 2 KNVREWFPVEMDSTGYYQF-KNAEAFQKYCTNECNSNLDKISAGCLYLLNEFFRDSSVFE 60
Query: 78 LILKNSFYFEEY 43
L+ K +FY +Y
Sbjct: 61 LVAKENFYIVQY 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,012,328
Number of Sequences: 1393205
Number of extensions: 8546639
Number of successful extensions: 20335
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20334
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
