Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006138A_C01 KMC006138A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180365.1| hypothetical protein; protein id: At2g27980.1 [... 129 2e-29
ref|NP_181288.1| unknown protein; protein id: At2g37520.1 [Arabi... 129 3e-29
pir||H84783 probable PHD-type zinc finger protein [imported] - A... 124 7e-28
ref|NP_181210.2| putative PHD-type zinc finger protein; protein ... 124 7e-28
ref|NP_190936.1| putative protein; protein id: At3g53680.1 [Arab... 124 1e-27
>ref|NP_180365.1| hypothetical protein; protein id: At2g27980.1 [Arabidopsis thaliana]
gi|25407937|pir||C84679 hypothetical protein At2g27980
[imported] - Arabidopsis thaliana
gi|4510418|gb|AAD21504.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1008
Score = 129 bits (325), Expect = 2e-29
Identities = 63/113 (55%), Positives = 86/113 (75%)
Frame = -3
Query: 598 LVVNSSV*SAXMLRIFGSDVAELPLVATSNGNHGKGYFPTLFSCIERLLAFMNVKSLVLP 419
L V+ + S + R+FGS++AELPLVATS G+GYF LF+CIERLL F+NVK +VLP
Sbjct: 889 LAVDEVIVSVGIFRVFGSELAELPLVATSKDCQGQGYFQCLFACIERLLGFLNVKHIVLP 948
Query: 418 AAEEAESIWTDKFGFSRMKPDELSDYRKNFNQMVTFKGTNMLHKLVPPCRIIS 260
AA+EA+SIWTDKFGF++M +E+ +YRK+++ M+ F GT+ML K VP +S
Sbjct: 949 AADEAKSIWTDKFGFTKMTDEEVKEYRKDYSVMI-FHGTSMLRKSVPAPSAVS 1000
>ref|NP_181288.1| unknown protein; protein id: At2g37520.1 [Arabidopsis thaliana]
gi|7485433|pir||T02518 hypothetical protein At2g37520
[imported] - Arabidopsis thaliana
gi|3236235|gb|AAC23623.1| unknown protein [Arabidopsis
thaliana] gi|20197471|gb|AAM15090.1| unknown protein
[Arabidopsis thaliana]
Length = 825
Score = 129 bits (324), Expect = 3e-29
Identities = 64/107 (59%), Positives = 83/107 (76%)
Frame = -3
Query: 598 LVVNSSV*SAXMLRIFGSDVAELPLVATSNGNHGKGYFPTLFSCIERLLAFMNVKSLVLP 419
L+VNS V SA +LRIFG +VAELP+VATS G+GYF L++C+E LL+ +NV++LVLP
Sbjct: 707 LIVNSLVVSAALLRIFGQEVAELPIVATSREYQGRGYFQGLYACVENLLSSLNVENLVLP 766
Query: 418 AAEEAESIWTDKFGFSRMKPDELSDYRKNFNQMVTFKGTNMLHKLVP 278
AAEEAESIWT KFGF++M +L +Y+K Q+ FKGT+ML K VP
Sbjct: 767 AAEEAESIWTKKFGFTKMSDQQLQEYQKEV-QLTIFKGTSMLEKKVP 812
>pir||H84783 probable PHD-type zinc finger protein [imported] - Arabidopsis
thaliana gi|4415917|gb|AAD20148.1| putative PHD-type zinc
finger protein [Arabidopsis thaliana]
Length = 958
Score = 124 bits (312), Expect = 7e-28
Identities = 64/112 (57%), Positives = 84/112 (74%)
Frame = -3
Query: 598 LVVNSSV*SAXMLRIFGSDVAELPLVATSNGNHGKGYFPTLFSCIERLLAFMNVKSLVLP 419
L VN++V SA +LR+FG +VAELPLVAT + KGYF LFSCIE+LL+ +NV+S+V+P
Sbjct: 819 LTVNATVVSAGLLRVFGREVAELPLVATRMCSREKGYFQLLFSCIEKLLSSLNVESIVVP 878
Query: 418 AAEEAESIWTDKFGFSRMKPDELSDYRKNFNQMVTFKGTNMLHKLVPPCRII 263
AAEEAE +W +KFGF ++ P++LS Y K QMV FKG +ML K V +II
Sbjct: 879 AAEEAEPLWMNKFGFRKLAPEQLSKYIKICYQMVRFKGASMLQKPVDSHQII 930
>ref|NP_181210.2| putative PHD-type zinc finger protein; protein id: At2g36720.1,
supported by cDNA: gi_20260433 [Arabidopsis thaliana]
gi|20260434|gb|AAM13115.1| putative PHD-type zinc finger
protein [Arabidopsis thaliana]
Length = 1007
Score = 124 bits (312), Expect = 7e-28
Identities = 64/112 (57%), Positives = 84/112 (74%)
Frame = -3
Query: 598 LVVNSSV*SAXMLRIFGSDVAELPLVATSNGNHGKGYFPTLFSCIERLLAFMNVKSLVLP 419
L VN++V SA +LR+FG +VAELPLVAT + KGYF LFSCIE+LL+ +NV+S+V+P
Sbjct: 868 LTVNATVVSAGLLRVFGREVAELPLVATRMCSREKGYFQLLFSCIEKLLSSLNVESIVVP 927
Query: 418 AAEEAESIWTDKFGFSRMKPDELSDYRKNFNQMVTFKGTNMLHKLVPPCRII 263
AAEEAE +W +KFGF ++ P++LS Y K QMV FKG +ML K V +II
Sbjct: 928 AAEEAEPLWMNKFGFRKLAPEQLSKYIKICYQMVRFKGASMLQKPVDSHQII 979
>ref|NP_190936.1| putative protein; protein id: At3g53680.1 [Arabidopsis thaliana]
gi|11282417|pir||T45908 hypothetical protein F4P12.380 -
Arabidopsis thaliana gi|6729519|emb|CAB67675.1| putative
protein [Arabidopsis thaliana]
Length = 839
Score = 124 bits (310), Expect = 1e-27
Identities = 63/107 (58%), Positives = 81/107 (74%)
Frame = -3
Query: 598 LVVNSSV*SAXMLRIFGSDVAELPLVATSNGNHGKGYFPTLFSCIERLLAFMNVKSLVLP 419
L+VNS V SA +LRIFG VAELP+VATS G+GYF LF+C+E LL+ +NV++L+LP
Sbjct: 725 LMVNSLVVSAALLRIFGQKVAELPIVATSREYQGRGYFQGLFACVENLLSSLNVENLLLP 784
Query: 418 AAEEAESIWTDKFGFSRMKPDELSDYRKNFNQMVTFKGTNMLHKLVP 278
AAEEAESIWT+KFGF++M L Y++ Q+ FKGT+ML K VP
Sbjct: 785 AAEEAESIWTNKFGFTKMTEHRLQRYQREV-QLTIFKGTSMLEKKVP 830
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,632,452
Number of Sequences: 1393205
Number of extensions: 10512648
Number of successful extensions: 26538
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 25868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26522
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
