Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006114A_C01 KMC006114A_c01
(747 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09890 hypothetical protein T22A6.100 - Arabidopsis thalian... 60 3e-08
ref|NP_194158.2| putative protein; protein id: At4g24270.1, supp... 60 3e-08
gb|AAL77677.1| AT4g24270/T22A6_100 [Arabidopsis thaliana] 60 3e-08
dbj|BAA95789.1| KED [Nicotiana tabacum] 40 0.046
ref|NP_470866.1| similar to unknown proteins [Listeria innocua] ... 36 0.66
>pir||T09890 hypothetical protein T22A6.100 - Arabidopsis thaliana
gi|5051769|emb|CAB45062.1| putative protein [Arabidopsis
thaliana] gi|7269277|emb|CAB79337.1| putative protein
[Arabidopsis thaliana]
Length = 768
Score = 60.5 bits (145), Expect = 3e-08
Identities = 36/113 (31%), Positives = 60/113 (52%)
Frame = -2
Query: 740 GKKLRIARSDPRRGGKKTSDAETXKEHAHXSNRPGRKRSVSIETDDTSKEDVNEAKLSSR 561
GKK+ IARS+P++G K+ + ++ G + S+ ++ E +
Sbjct: 670 GKKISIARSNPKKGKKEFT--------RRGNDGSGNSKDPSLISEKAKAPLGGETE---- 717
Query: 560 NVKGSDDVQLKGKNTFAAPRNVRPRGFDANKSKLEEEGEEKPKSNEEFRKMII 402
+ ++V+++GKNTFA PRNV+P G+ K +E PKSN+EFR M +
Sbjct: 718 GERKGNEVEVRGKNTFAVPRNVKPLGYTTPK----PSADETPKSNDEFRNMFL 766
>ref|NP_194158.2| putative protein; protein id: At4g24270.1, supported by cDNA:
gi_18700130 [Arabidopsis thaliana]
Length = 816
Score = 60.5 bits (145), Expect = 3e-08
Identities = 36/113 (31%), Positives = 60/113 (52%)
Frame = -2
Query: 740 GKKLRIARSDPRRGGKKTSDAETXKEHAHXSNRPGRKRSVSIETDDTSKEDVNEAKLSSR 561
GKK+ IARS+P++G K+ + ++ G + S+ ++ E +
Sbjct: 718 GKKISIARSNPKKGKKEFT--------RRGNDGSGNSKDPSLISEKAKAPLGGETE---- 765
Query: 560 NVKGSDDVQLKGKNTFAAPRNVRPRGFDANKSKLEEEGEEKPKSNEEFRKMII 402
+ ++V+++GKNTFA PRNV+P G+ K +E PKSN+EFR M +
Sbjct: 766 GERKGNEVEVRGKNTFAVPRNVKPLGYTTPK----PSADETPKSNDEFRNMFL 814
>gb|AAL77677.1| AT4g24270/T22A6_100 [Arabidopsis thaliana]
Length = 816
Score = 60.5 bits (145), Expect = 3e-08
Identities = 36/113 (31%), Positives = 60/113 (52%)
Frame = -2
Query: 740 GKKLRIARSDPRRGGKKTSDAETXKEHAHXSNRPGRKRSVSIETDDTSKEDVNEAKLSSR 561
GKK+ IARS+P++G K+ + ++ G + S+ ++ E +
Sbjct: 718 GKKISIARSNPKKGKKEFT--------RRGNDGSGNSKDPSLISEKAKAPLGGETE---- 765
Query: 560 NVKGSDDVQLKGKNTFAAPRNVRPRGFDANKSKLEEEGEEKPKSNEEFRKMII 402
+ ++V+++GKNTFA PRNV+P G+ K +E PKSN+EFR M +
Sbjct: 766 GERKGNEVEVRGKNTFAVPRNVKPLGYTTPK----PSADETPKSNDEFRNMFL 814
>dbj|BAA95789.1| KED [Nicotiana tabacum]
Length = 513
Score = 39.7 bits (91), Expect = 0.046
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Frame = -2
Query: 737 KKLRIARSDPRRGGKKTSDAETXKEHAHXSNRPGRKRSVSIETDDTSKED-VNEAKLSSR 561
K+ + D G KK + + K+ ++ + +S E+D+ K+D VNE ++++R
Sbjct: 344 KETEEEKDDDEEGQKKEKEKKNKKDKKEKKDKEKKVKSKE-ESDEEDKQDKVNEVEVATR 402
Query: 560 NVKGSDDVQL-------KGKNTFAAPRNVRPRGFDANKSKLEE--EGEEKPKSNEEFRKM 408
+K DD ++ KGK + + DA K K E+ + E+K KSN + +
Sbjct: 403 EIKIEDDKKISDGEADEKGKRKEKGKDSKDEKQKDAKKDKAEKTRKLEDKYKSNGKLKSK 462
Query: 407 I 405
+
Sbjct: 463 L 463
Score = 32.3 bits (72), Expect = 7.4
Identities = 24/107 (22%), Positives = 45/107 (41%), Gaps = 1/107 (0%)
Frame = -2
Query: 737 KKLRIARSDPRRGGKKTSDAETXKEHAHXSNRPGRKRSVSIETDDTSKEDVNEAKLSSRN 558
KKL+ + D + KK E KE + + + + +KE+ ++K S
Sbjct: 140 KKLKKGKKDRKEKEKKDKSIEESKEEKDDDKGEKKDKEQKDKKEKKNKEEKGKSKGESEE 199
Query: 557 VKGSDDVQLKGKNTFAAPRNVRPRGFDANKSK-LEEEGEEKPKSNEE 420
+ KGKN + + R + N K ++++ E+K K +E
Sbjct: 200 ETEEEKDDEKGKNKESDEEDERQTEEEENDEKGVKKDKEKKNKEKKE 246
>ref|NP_470866.1| similar to unknown proteins [Listeria innocua]
gi|25380884|pir||AI1623 hypothetical protein homolog
lin1530 [imported] - Listeria innocua (strain Clip11262)
gi|16414003|emb|CAC96761.1| similar to unknown proteins
[Listeria innocua]
Length = 210
Score = 35.8 bits (81), Expect = 0.66
Identities = 20/58 (34%), Positives = 32/58 (54%), Gaps = 3/58 (5%)
Frame = -2
Query: 716 SDPRRGGKKTSDAETXKEHAHXSNRPGRKRSVSIE---TDDTSKEDVNEAKLSSRNVK 552
SDP + KT+ + KE A SN+ K+S S + T+ T +D N AK+ +++ K
Sbjct: 59 SDPTQQENKTASSNAKKEDAAKSNKTSEKKSTSSDEKTTETTKSDDPNVAKVITKDWK 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,100,493
Number of Sequences: 1393205
Number of extensions: 11671904
Number of successful extensions: 30312
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 29047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30245
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
