Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006108A_C01 KMC006108A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194431.1| putative protein; protein id: At4g27010.1 [Arab... 67 9e-11
ref|NP_565039.1| hypothetical protein; protein id: At1g72270.1 [... 54 8e-07
ref|NP_232799.1| hypothetical protein [Vibrio cholerae] gi|11345... 32 3.3
pir||T00078 probable RNA-directed DNA polymerase (EC 2.7.7.49) -... 32 4.3
>ref|NP_194431.1| putative protein; protein id: At4g27010.1 [Arabidopsis thaliana]
gi|7485343|pir||T04824 hypothetical protein F10M23.350 -
Arabidopsis thaliana gi|4455224|emb|CAB36547.1| putative
protein [Arabidopsis thaliana] gi|7269554|emb|CAB79556.1|
putative protein [Arabidopsis thaliana]
Length = 2535
Score = 67.4 bits (163), Expect = 9e-11
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Frame = -1
Query: 490 LLPSVVSALCLLIFGSSNFPVGRTDLLRGYNTFILSHCLSSRVRCPPEADPAWRWLFDQP 311
LLPSVV AL L++ ++ G +D + L L S++ PPEA P WRW + Q
Sbjct: 2419 LLPSVVFALSLMLL-HNDLGTGESD-----GDYKLIKSLCSKISSPPEAIPGWRWSYYQA 2472
Query: 310 WKDQSREN-TDSPKMEEYHACMILLVIVANVLSGKKLESANFLL 182
W+D S E TD K+ E HAC LL+I + +L ES LL
Sbjct: 2473 WRDLSSEQATDLDKINELHACQHLLLIFSAMLGETPQESQQVLL 2516
>ref|NP_565039.1| hypothetical protein; protein id: At1g72270.1 [Arabidopsis thaliana]
gi|25372780|pir||D96746 hypothetical protein T9N14.23
[imported] - Arabidopsis thaliana
gi|12323666|gb|AAG51799.1|AC067754_15 hypothetical
protein; 75067-63678 [Arabidopsis thaliana]
Length = 2777
Score = 54.3 bits (129), Expect = 8e-07
Identities = 38/103 (36%), Positives = 52/103 (49%)
Frame = -1
Query: 490 LLPSVVSALCLLIFGSSNFPVGRTDLLRGYNTFILSHCLSSRVRCPPEADPAWRWLFDQP 311
LLPSVV AL L++ + G T+ GY L SR+ P EA P WRW + Q
Sbjct: 2609 LLPSVVFALSLMVLRNGLETTG-TESEGGYKVI---RSLCSRISSPTEAIPVWRWSYHQD 2664
Query: 310 WKDQSRENTDSPKMEEYHACMILLVIVANVLSGKKLESANFLL 182
S TD +++E +AC LL+I +++L ES LL
Sbjct: 2665 L--PSERATDPKEIDELYACQELLLIFSDMLRETPRESQQTLL 2705
>ref|NP_232799.1| hypothetical protein [Vibrio cholerae] gi|11345789|pir||H82464
hypothetical protein VCA0405 [imported] - Vibrio
cholerae (strain N16961 serogroup O1)
gi|9657806|gb|AAF96311.1| hypothetical protein [Vibrio
cholerae]
Length = 206
Score = 32.3 bits (72), Expect = 3.3
Identities = 14/36 (38%), Positives = 22/36 (60%)
Frame = -1
Query: 505 GINQELLPSVVSALCLLIFGSSNFPVGRTDLLRGYN 398
G+ L+ +++A+CLLI G SN + TD +G N
Sbjct: 30 GLIAALISPLLAAICLLIIGDSNEKINSTDASKGIN 65
>pir||T00078 probable RNA-directed DNA polymerase (EC 2.7.7.49) - Chlorella
vulgaris retrotransposon Zepp gi|3073779|dbj|BAA25763.1|
reverse transcriptase [Chlorella vulgaris]
Length = 1309
Score = 32.0 bits (71), Expect = 4.3
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -1
Query: 496 QELLPSVVSALCLLIFGSSNFPVGRTDLLRG 404
QELLPS+ +A CLL+ G N G+ D+ G
Sbjct: 140 QELLPSLPAARCLLVGGDFNCIAGQQDMAAG 170
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,619,398
Number of Sequences: 1393205
Number of extensions: 8454296
Number of successful extensions: 19637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19631
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
