Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006077A_C01 KMC006077A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_146746.1| similar to olfactory receptor MOR168-1 [Mus mus... 33 3.1
sp|P79826|MYPR_ONCMY MYELIN PROTEOLIPID PROTEIN (PLP) (LIPOPHILI... 33 4.0
ref|NP_588398.1| dna-directed rna polymerase iii subunit [Schizo... 32 5.3
ref|NP_494623.1| Predicted CDS, putative membrane protein family... 32 9.0
ref|NP_403676.1| putative GntR-famly transcriptional regulator [... 32 9.0
>ref|XP_146746.1| similar to olfactory receptor MOR168-1 [Mus musculus]
gi|22129285|ref|NP_666995.1| olfactory receptor MOR168-1
[Mus musculus] gi|18479918|gb|AAL60973.1| olfactory
receptor MOR168-1 [Mus musculus]
Length = 310
Score = 33.1 bits (74), Expect = 3.1
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Frame = +3
Query: 135 VNSPRRKNIVSLLYCMSVLHQLFYFYNS----IQIQACDAHLVLSASVSSHLLFLICSGQ 302
+N RKN +S + CMS L+ +F S + A D ++ + + L L+ S +
Sbjct: 83 MNFITRKNTISYMECMSQLYFFCFFVISECYVLTSMAYDRYVAICKPL---LYNLVMSSK 139
Query: 303 LFGNLVAVSYFGIILSGLKHQLILPFPRTNIC 398
L NL+ VSYF + H + + R N C
Sbjct: 140 LCLNLMLVSYFIAFSESVAHTVCI--MRLNFC 169
>sp|P79826|MYPR_ONCMY MYELIN PROTEOLIPID PROTEIN (PLP) (LIPOPHILIN) (DM20)
gi|1743432|gb|AAB39006.1| myelin proteolipid protein
[Oncorhynchus mykiss]
Length = 258
Score = 32.7 bits (73), Expect = 4.0
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Frame = +2
Query: 215 FYTDTSMRCSFGP-------KCIS*QSFIIFNLFWSVIWE--------PSSSQLFWHHIV 349
FYT ++++ +FG +C+S +FII +VIW PSSS L WH
Sbjct: 103 FYTTSAVKQTFGEFRSTRCGRCLS-LTFIIVTYVLAVIWLAVFAFTAIPSSSSLIWHRPA 161
Query: 350 RLETS-AYSTFSSNQY 394
TS +T S NQ+
Sbjct: 162 TTSTSWTETTPSINQH 177
>ref|NP_588398.1| dna-directed rna polymerase iii subunit [Schizosaccharomyces pombe]
gi|9297041|sp|O94553|RPC6_SCHPO Probable DNA-directed
RNA polymerase III 34 kDa polypeptide
gi|7490489|pir||T41266 dna-directed rna polymerase iii
subunit - fission yeast (Schizosaccharomyces pombe)
gi|4176538|emb|CAA22872.1| dna-directed rna polymerase
iii subunit [Schizosaccharomyces pombe]
Length = 301
Score = 32.3 bits (72), Expect = 5.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 121 YMLYMLIPQDEKTSFPYFTVCLYCINF--SISIILYRYKHA 237
YMLY L+P E T P+FT + F ++ ++YRY H+
Sbjct: 145 YMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHS 185
>ref|NP_494623.1| Predicted CDS, putative membrane protein family member, with a
transmembrane domain, nematode specific [Caenorhabditis
elegans] gi|7503119|pir||T32284 hypothetical protein
F40H7.1 - Caenorhabditis elegans
gi|7206642|gb|AAF39801.1| Hypothetical protein F40H7.1
[Caenorhabditis elegans]
Length = 207
Score = 31.6 bits (70), Expect = 9.0
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Frame = +3
Query: 180 MSVLHQLFYFYNSIQIQACDAHLVLSA-SVSSHLLFLICSG---------------QLFG 311
+ VL LF FY+ I ++ +++ S+ S+S+ L+ LI G L G
Sbjct: 26 IGVLVNLFMFYHFISLEKTVFYILCSSKSISNTLVLLIYFGFVGPTNAFYKAMGSDMLSG 85
Query: 312 NLVAVSYFGIILSGLKHQLILPFPRTNICFCS 407
L FG+ L G QL++ R + +CS
Sbjct: 86 YLYQAMGFGLYLQGPTTQLMITINRFLVVWCS 117
>ref|NP_403676.1| putative GntR-famly transcriptional regulator [Yersinia pestis]
gi|22123933|ref|NP_667356.1| hypothetical protein
[Yersinia pestis KIM] gi|25299340|pir||AC0002 probable
GntR-famly transcription regulator YPO0010 [imported] -
Yersinia pestis (strain CO92)
gi|15978125|emb|CAC88877.1| putative GntR-famly
transcriptional regulator [Yersinia pestis CO92]
gi|21956668|gb|AAM83607.1|AE013602_1 hypothetical
protein [Yersinia pestis KIM]
Length = 229
Score = 31.6 bits (70), Expect = 9.0
Identities = 28/89 (31%), Positives = 39/89 (43%)
Frame = +3
Query: 78 FLTIPYTETPMQKLIYAVHVNSPRRKNIVSLLYCMSVLHQLFYFYNSIQIQACDAHLVLS 257
FL + + P + A H N +R+ + SL+ M LH F IQ+ L+
Sbjct: 107 FLILRTSLEPQACYLAATHANEKQRELLASLVAEMRALHSNFNREQWIQVDTQFHKLIYE 166
Query: 258 ASVSSHLLFLICSGQLFGNLVAVSYFGII 344
AS + FLI LF + V SYF I
Sbjct: 167 ASGNP---FLISFANLFSS-VYYSYFRAI 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,866,325
Number of Sequences: 1393205
Number of extensions: 9784587
Number of successful extensions: 20692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20689
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
