Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006050A_C01 KMC006050A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK84670.1| polyprotein precursor [gill-associated virus] 35 0.52
emb|CAB01651.2| Hypothetical protein M176.4 [Caenorhabditis eleg... 34 1.2
ref|NP_496013.1| Putative plasma membrane membrane protein, with... 34 1.2
ref|XP_138852.1| similar to ubiquitin specific protease 10 [Homo... 33 2.0
ref|XP_138429.1| similar to hepatitis A virus cellular receptor ... 32 7.6
>gb|AAK84670.1| polyprotein precursor [gill-associated virus]
Length = 1640
Score = 35.4 bits (80), Expect = 0.52
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 318 YSILNFSLNILFVFLFVPL-LHSAPLFIYRPESLLISSCI*RAQLYFFHVFNNCS*DVKN 494
YSI N SLN L + LF+ L L P F PE+L S+ F+ +C+ + N
Sbjct: 201 YSIFNTSLNFLLIILFILLCLLITPTFAKEPETLFSSNHTEPYDCMFWAANGDCTCNATN 260
Query: 495 C 497
C
Sbjct: 261 C 261
>emb|CAB01651.2| Hypothetical protein M176.4 [Caenorhabditis elegans]
Length = 236
Score = 34.3 bits (77), Expect = 1.2
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 252 LSHDFRLCICDQSSFPPHSLFLYSILNFSLNILFVFLFVPLL--HSAPLFIYRPESLLIS 425
+ H F L + Q + H+ FL +L ++L ++ F+P+L H PL ++ SLL+S
Sbjct: 94 IGHLFYLSLYRQHATKIHTKFLLGMLAWAL-VIGQLCFIPMLADHRGPLTVFASYSLLLS 152
Query: 426 SC 431
+C
Sbjct: 153 TC 154
>ref|NP_496013.1| Putative plasma membrane membrane protein, with at least 8
transmembrane domains, nematode specific [Caenorhabditis
elegans] gi|7506076|pir||T23787 hypothetical protein
M176.4 - Caenorhabditis elegans
Length = 448
Score = 34.3 bits (77), Expect = 1.2
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 252 LSHDFRLCICDQSSFPPHSLFLYSILNFSLNILFVFLFVPLL--HSAPLFIYRPESLLIS 425
+ H F L + Q + H+ FL +L ++L ++ F+P+L H PL ++ SLL+S
Sbjct: 94 IGHLFYLSLYRQHATKIHTKFLLGMLAWAL-VIGQLCFIPMLADHRGPLTVFASYSLLLS 152
Query: 426 SC 431
+C
Sbjct: 153 TC 154
>ref|XP_138852.1| similar to ubiquitin specific protease 10 [Homo sapiens] [Mus
musculus]
Length = 233
Score = 33.5 bits (75), Expect = 2.0
Identities = 23/93 (24%), Positives = 44/93 (46%), Gaps = 11/93 (11%)
Frame = -2
Query: 433 MHEEISKLSGL*MKRGAECKRGTNRNTNRILREKFRIEYRNRECGGKELWS---QIQSRK 263
MH ++ KLS + G C ++R+ ++++ K +E ++ EC KE+ S + +K
Sbjct: 13 MHPKLKKLSEV---AGPHCHLDSSRSLHKLIGSKVVLESKDNECSEKEIMSVKLTVGGQK 69
Query: 262 S*E--------RNQLQLVLSPSNCCLSSFSYLT 188
S L+++ NCC + + LT
Sbjct: 70 SEGSLETVVLLHKPTSLLINKGNCCYINSTLLT 102
>ref|XP_138429.1| similar to hepatitis A virus cellular receptor 1; T cell
immunoglobin domain and mucin doamin protein 1 [Mus
musculus]
Length = 347
Score = 31.6 bits (70), Expect = 7.6
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 259 TISDSVSVTKAPFLHTLYFCTLF*IFLSISCLCFCSSPFCTLLLS 393
T+ DS +VT + + Y C LF LS + FC+S CTL+LS
Sbjct: 272 TVPDSCTVTGSCTVPDSYTCILF---LSHTDQLFCTSVLCTLVLS 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,674,295
Number of Sequences: 1393205
Number of extensions: 8971093
Number of successful extensions: 21644
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21618
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
